Table 2 Parameters configured for the algorithms used in the research
algorithms | parameters |
|---|---|
biomapp::chip | -k <size of kmer> -n 1 -d 2 -c zoops -r 1000 -f 0.001 |
meme | -w <size of kmer> -dna -mod zoops -nmotifs 1 |
prosampler | -k <size of kmer> -m 1 -l 0 |
homer | -len <size of kmer> -S 1 |