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Table 4 AUC values for an RDR6 knockout dataset

From: TCC: an R package for comparing tag count data with robust normalization strategies

DE method

edgeR

DESeq

baySeq

TMM

68.36

61.09

60.21

DEGES/TbT

66.70

61.40

60.09

DEGES/edgeR

69.28

61.27

60.31

iDEGES/edgeR

65.70

61.34

60.86

iDEGES/TDT

65.76

60.84

60.19

iDEGES/DESeq

64.88

60.45

59.20

  1. The AUC values (%) for a total of 18 combinations with default setting (i.e., a floor PDEG of 5%) are shown.
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BMC Bioinformatics

ISSN: 1471-2105

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