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Table 1 List of species with one or more conserved uPEPs using the uORFs identified in Crowe et al[2]

From: uPEPperoni: An online tool for upstream open reading frame location and analysis of transcript conservation

Species containing one or more conserved uPEPs

Number of conserved uPEPsa

Human, mouse, rat, cow, chicken, frog, monkey, horse, chimpanzee, zebra fish, salmon

1

Human, mouse, rat, orangutan, chicken, frog, zebra fish, salmon

1

Human, mouse, rat, cow, monkey, chicken, rabbit, chimpanzee

1

Human, mouse, rat, pig, chicken, cat, horse

1

Human, mouse, rat, cow, orangutan, monkey

1

Human, mouse, rat, cow, orangutan, pig

1

Human, mouse, rat, cow, orangutan, frog

1

Human, mouse, rat, cow, chicken, frog

1

Human, mouse, rat, cow, orangutan

13

Human, mouse, rat, orangutan, chicken

1

Human, mouse, rat, zebra fish, frog

1

Human, mouse, rat, orangutan, pig

1

Human, mouse, rat, pig, monkey

1

Human, mouse, cow, pig, orangutan

1

Human, mouse, rat, orangutan

10

Human, mouse, rat, cow, monkey

2

Human, mouse, rat, cow, pig

1

Human, mouse, rat, cow, chicken

1

Human, mouse, rat, cow, frog

1

Human, mouse, rat, cow

27

Human, mouse, cow, orangutan

7

Human, mouse, cow, pig

3

Human, mouse, rat, pig

2

Human, mouse, rat, monkey

2

Human, mouse, cow, monkey

1

Human, mouse, orangutan, chimpanzee

1

Human, mouse, orangutan, hamster

1

Human, mouse, rat, horse

1

Human, mouse, rat, chicken

1

Human, mouse, rat

36

Human, mouse, cow

15

Human, mouse, orangutan

5

Human, mouse, pig

2

Human, mouse, monkey

1

Human, mouse

55

  1. aSpecifies the total number of individual uPEPs that show sequence conservation across the group of species indicated.
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BMC Bioinformatics

ISSN: 1471-2105

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