Table 2 GO and MeSH annotations for antibiotic registance Pseudomonas aeruginosa : comparison of NCBI gene descriptions, GO, and MeSH
From: MeSH ORA framework: R/Bioconductor packages to support MeSH over-representation analysis
Locus | Symbol | ID | Description | Gene ontology | ||
|---|---|---|---|---|---|---|
| Â | Â | Â | Â | BP | MF | CC |
PA3303 | - | 882468 | (control) | - | - | - |
PA0392 | - | 878514 | Conserved hypothetical | - | - | - |
PA4077 | - | 878707 | Transcriptional regulator | - | - | - |
PA5199 | amgS | 880300 | Two-component sensor | Phosphorelay signal transduction system | Phosphorelay sensor kinase activity | - |
PA5366 | pstB | 881628 | Phosphate transport | Transport | - | Membrane (+1) |
PA5200 | amgR | 880301 | Two-component response regulator | Phosphate-containing compound metabolic process (+2) | Phosphorelay response regulator activity | - |
PA0016 | trkA | 879255 | Potassium uptake | Transport (+1) | Glutamyl-tRNA reductase activity (+1) | - |
PA4942 | hflK | 877755 | Protease subunit | Cytokinesis by binary fission (+2) | - | - |
PA3014 | faoA | 878680 | Fatty acid oxidation | Cellular amino acid metabolic process (+11) | Benzoylformate decarboxylase activity | - |
PA4398 | - | 881355 | Two-component sensor | Phosphate ion transport | - | - |
PA5528 | - | 877964 | Hypothetical | - | - | - |
PA1805 | ppiD | 878369 | Peptidyl-prolyl isomerase | Protein folding (+1) | Chorismate synthase activity | - |
PA3016 | - | 879098 | Hypothetical | - | - | - |
PA4223 | - | 880074 | Transport | Lipid transport | - | - |
PA4960 | - | 878558 | Amino acid metabolism | L-serine biosynthetic process | - | - |
PA0374 | ftsE | 883078 | Cell division | Cytokinesis (+2) | - | - |
PA3013 | foaB | 880523 | Fatty acid oxidation | Cellular amino acid metabolic process (+7) | Thioredoxin-disulfide reductase activity | - |
PA5471 | - | 877632 | Hypothetical | Translational termination | - | - |
PA0502 | - | 878654 | Biotin biosynthesis | Biotin biosynthetic process | - | - |
PA3194 | edd | 882909 | Carbohydrate metabolism | Generation of precursor metabolites and energy (+3) | Phosphoenolpyruvate carboxylase activity | - |
PA1775 | cmpX | 877590 | Cytoplasmic membrane protein | - | - | - |
PA0427 | oprM | 877851 | Multidrug efflux | transport (+1) | Porin activity (+1) | Membrane |
PA4222 | - | 880073 | Transport | Transport | - | ATP-binding cassette (ABC) transporter complex |
PA5369 | pstS | 880528 | Phosphate transport | - | - | - |
PA2018 | mexY | 878882 | Multidrug efflux | Transport (+1) | - | Membrane (+1) |
PA5285 | - | 878098 | Hypothetical | - | - | - |
PA2604 | - | 882310 | Conserved hypothetical | - | - | - |
PA2019 | mexX | 878839 | Multidrug efflux | Transport (+1) | - | - |
PA4050 | pgpA | 879074 | Phospholipid biosynthesis | Cellular lipid metabolic process | - | - |