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Table 1 Simulation studies.

From: Regularized gene selection in cancer microarray meta-analysis

   

Pooled TGDR

meta analysis

MTGDR

n m

d

[l, u]

Positive

True pos.

Positive

True pos.

Positive

True pos.

30

100

[0.5, 1]

15 (2.2)

13 (1.7)

2 (1.3)

2 (1.3)

16 (1.8)

15 (1.8)

 

500

[0.5, 1]

17 (2.6)

13 (1.9)

2 (1.2)

2 (1.2)

15 (1.7)

14 (1.7)

 

1000

[0.5, 1]

19 (3.3)

13 (2.0)

2 (1.2)

2 (1.2)

16 (1.9)

14 (1.7)

30

100

[1, 1.5]

13 (2.0)

13 (1.9)

1 (1.0)

1 (1.0)

13 (2.0)

13 (2.0)

 

500

[1, 1.5]

14 (2.1)

10 (1.8)

1 (1.0)

1 (1.0)

14 (1.7)

14 (1.7)

 

1000

[1, 1.5]

14 (2.2)

12 (1.9)

1 (0.8)

1 (0.8)

15 (1.9)

14 (1.9)

100

100

[0.5, 1]

18 (1.7)

15 (1.5)

6 (1.9)

6 (1.9)

18 (1.8)

17 (1.5)

 

500

[0.5, 1]

21 (2.9)

16 (1.5)

5 (1.8)

5 (1.8)

19 (2.1)

18 (1.4)

 

1000

[0.5, 1]

22 (2.8)

16 (1.5)

5 (1.8)

5 (1.8)

19 (2.3)

17 (1.5)

100

100

[1, 1.5]

16 (1.5)

14 (1.5)

4 (1.5)

4 (1.5)

16 (1.7)

16 (1.7)

 

500

[1, 1.5]

18 (2.2)

14 (1.7)

4 (1.6)

4 (1.6)

16 (1.7)

15 (1.6)

 

1000

[1, 1.5]

14 (2.2)

12 (1.7)

4 (1.6)

4 (1.6)

17 (1.7)

16 (1.6)

  1. Mean (standard deviation) of positive (number of genes selected by each approach) and true positive (number of selected genes that are truly cancer-associated) based on 200 replicates.