BMC Bioinformatics

Collections open to submissions

Prediction and modelling of RNA structure and interactions

Guest edited by Anže Božič, Letizia Chiodo and Luca Tesei

Evolutionary studies

Guest edited by Shibiao Wan

Functional annotation and pathway analysis

Guest edited by Giuseppe Agapito

Mass spectrometry-based proteomics: advances in data processing

Guest edited by Andreas Hildebrandt

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Editor's Picks

RegiSTORM: channel registration for multi-color stochastic optical reconstruction microscopy

New Content Item Tidyproteomics: an open-source R package and data object for quantitative proteomics post analysis and visualization

Biocaiv: an integrative webserver for motif-based clustering analysis and interactive visualization of biological networks

Authors: Dong-Xu Li, Peng Zhou, Bo-Wei Zhao, Xiao-Rui Su, Guo-Dong Li, Jun Zhang, Peng-Wei Hu and Lun Hu

Content type: Software 29 November 2023
Detection of continuous hierarchical heterogeneity by single-cell surface antigen analysis in the prognosis evaluation of acute myeloid leukaemia

Authors: Nan Shao, Chenshuo Ren, Tianyuan Hu, Dianbing Wang, Xiaofan Zhu, Min Li, Tao Cheng, Yingchi Zhang and Xian-En Zhang

Content type: Research 28 November 2023
Machine learning-based approaches for ubiquitination site prediction in human proteins

Authors: Mahdi Pourmirzaei, Shahin Ramazi, Farzaneh Esmaili, Seyedehsamaneh Shojaeilangari and Abdollah Allahvardi

Content type: Research 28 November 2023
Transformer-based tool recommendation system in Galaxy

Authors: Anup Kumar, Björn Grüning and Rolf Backofen

Content type: Software 27 November 2023
scMuffin: an R package to disentangle solid tumor heterogeneity by single-cell gene expression analysis

Authors: Valentina Nale, Alice Chiodi, Noemi Di Nanni, Ingrid Cifola, Marco Moscatelli, Cinzia Cocola, Matteo Gnocchi, Eleonora Piscitelli, Ada Sula, Ileana Zucchi, Rolland Reinbold, Luciano Milanesi, Alessandra Mezzelani, Paride Pelucchi and Ettore Mosca

Content type: Software 27 November 2023

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QMachine: commodity supercomputing in web browsers

Authors: Sean R Wilkinson and Jonas S Almeida

Content type: Research article 9 June 2014
WGCNA: an R package for weighted correlation network analysis

Authors: Peter Langfelder and Steve Horvath

Content type: Software 29 December 2008
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Authors: Bo Li and Colin N Dewey

Content type: Software 4 August 2011

The Related Article to this article has been published in Nature Protocols 2013 8:nprot.2013.084
Statistical analysis of real-time PCR data

Authors: Joshua S Yuan, Ann Reed, Feng Chen and C Neal Stewart Jr

Content type: Methodology article 22 February 2006
Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

Authors: Jian Ye, George Coulouris, Irena Zaretskaya, Ioana Cutcutache, Steve Rozen and Thomas L Madden

Content type: Software 18 June 2012

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Aims and scope

BMC Bioinformatics is an open access, peer-reviewed journal that considers articles describing novel computational algorithms and software, models and tools, including statistical methods, machine learning and artificial intelligence, as well as systems biology.

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Improving function prediction by considering proteins in terms of their constituent domains

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BMC Bioinformatics

Collections open to submissions

Prediction and modelling of RNA structure and interactions

Evolutionary studies

Functional annotation and pathway analysis

Mass spectrometry-based proteomics: advances in data processing

Editor's Picks

Articles

Biocaiv: an integrative webserver for motif-based clustering analysis and interactive visualization of biological networks

Detection of continuous hierarchical heterogeneity by single-cell surface antigen analysis in the prognosis evaluation of acute myeloid leukaemia

Machine learning-based approaches for ubiquitination site prediction in human proteins

Transformer-based tool recommendation system in Galaxy

scMuffin: an R package to disentangle solid tumor heterogeneity by single-cell gene expression analysis

QMachine: commodity supercomputing in web browsers

WGCNA: an R package for weighted correlation network analysis

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Statistical analysis of real-time PCR data

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

Aims and scope

Become an Editorial Board Member

Featured blog

Spotlight On

Climate Change

BMC Series Blog

Highlights of the BMC Series – October 2023

Mouth Cancer Awareness Month: improving patient outcomes with early diagnosis and treament

Highlights of the BMC Series – September 2023

Latest Tweets

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