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Featured blog: A Year in Bioinformatics

As we begin a fresh new year, the inhouse editors of BMC Bioinformatics look back over some of the fascinating articles published in 2017.

Content type: Software
| 21 September 2018

ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature

Authors: Alperen Dalkiran, Ahmet Sureyya Rifaioglu, Maria Jesus Martin, Rengul Cetin-Atalay, Volkan Atalay and Tunca Doğan
Content type: Methodology article
| 21 September 2018

Overlapping group screening for detection of gene-gene interactions: application to gene expression profiles with survival trait

Authors: Jie-Huei Wang and Yi-Hau Chen
Content type: Research article
| 21 September 2018

Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks

Authors: Xiaoxia Liu, Zhihao Yang, Shengtian Sang, Ziwei Zhou, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang and Bo Xu
Content type: Methodology article
| 21 September 2018

Progressive multiple sequence alignment with indel evolution

Authors: Massimo Maiolo, Xiaolei Zhang, Manuel Gil and Maria Anisimova
Content type: Methodology article
| 21 September 2018

Initial state perturbations as a validation method for data-driven fuzzy models of cellular networks

Authors: Lidija Magdevska, Miha Mraz, Nikolaj Zimic and Miha Moškon

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Content type: Research article
| 9 June 2014

QMachine: commodity supercomputing in web browsers

Authors: Sean R Wilkinson and Jonas S Almeida
Content type: Software
| 4 August 2011

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Authors: Bo Li and Colin N Dewey
Content type: Software
| 29 December 2008

WGCNA: an R package for weighted correlation network analysis

Authors: Peter Langfelder and Steve Horvath
Content type: Research article
| 9 March 2013

A comparison of methods for differential expression analysis of RNA-seq data

Authors: Charlotte Soneson and Mauro Delorenzi
Content type: Research article
| 17 November 2006

Novel methods for secondary structure determination using low wavelength (VUV) circular dichroism spectroscopic data

Authors: Jonathan G Lees, Andrew J Miles, Robert W Janes and B A Wallace

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Aims and scope

BMC Bioinformatics is an open access, peer-reviewed journal that considers articles on all aspects of the development, testing and novel application of computational and statistical methods for the modeling and analysis of all kinds of biological data, as well as other areas of computational biology.

Editor

Alison Cuff, BioMed Central

Section Editors

John S Garavelli, University of Delaware
Lukasz Kurgan, Virginia Commonwealth University
Adam Olshen, University of California, San Francisco
Hanchuan Peng, Allen Institute for Brain Science
Graziano Pesole, University of Bari
Olivier Poch, ICube Laboratory, Strasbourg
João Setubal, Universidade de São Paulo
Hagit Shatkay, University of Delaware
Jean-Philippe Vert, Mines ParisTech

Lukasz Kurgan, Section Editor

Structural analysis

BMC Series blog

Highlights of the BMC series: August 2018

10 September 2018
Alcohol as part of ‘care practices’ in White British women’s everyday personal relationships

10 September 2018
What do we know about migraine? Mechanisms, treatment and the future

07 September 2018

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BMC Bioinformatics

Get credit for your data

Featured blog: A Year in Bioinformatics

Articles

ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature

Overlapping group screening for detection of gene-gene interactions: application to gene expression profiles with survival trait

Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks

Progressive multiple sequence alignment with indel evolution

Initial state perturbations as a validation method for data-driven fuzzy models of cellular networks

QMachine: commodity supercomputing in web browsers

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

WGCNA: an R package for weighted correlation network analysis

A comparison of methods for differential expression analysis of RNA-seq data

Novel methods for secondary structure determination using low wavelength (VUV) circular dichroism spectroscopic data

Aims and scope

Editor

Section Editors

Lukasz Kurgan, Section Editor

Structural analysis

BMC Series blog

Highlights of the BMC series: August 2018

Alcohol as part of ‘care practices’ in White British women’s everyday personal relationships

What do we know about migraine? Mechanisms, treatment and the future

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2017 Journal Metrics

BMC Bioinformatics

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