BMC Bioinformatics

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Announcement: New Sequence Analysis Section

The sections "Sequence Analysis (methods)" and "Sequence Analysis (applications)" in BMC Bioinformatics have been merged into one new section! Read our blog post to find out more.

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Call for papers: Machine Learning and Artificial Intelligence in Bioinformatics

BMC Bioinformatics are excited to announce the launch of a new section, "Machine Learning and Artificial Intelligence in Bioinformatics" lead by Section Editor Professor Jean-Philippe Vert.

To celebrate this, we are also launching a new thematic series "Machine learning for computational and systems biology".

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Call for papers: Computational Analysis of Biological Images

BMC Bioinformatics are also excited to announce the launch of the sections “Imaging and Image analysis” and “Data Visualization” sections, replacing our “Imaging, image analysis and data visualization” section.

To celebrate this, we are launching the series "Computational analysis of biological Images", lead by Guest Editor Professor Ge Yang.

Content type: Software
| 16 January 2019

MITK-ModelFit: A generic open-source framework for model fits and their exploration in medical imaging – design, implementation and application on the example of DCE-MRI

Authors: Charlotte Debus, Ralf Floca, Michael Ingrisch, Ina Kompan, Klaus Maier-Hein, Amir Abdollahi and Marco Nolden
Content type: Software
| 15 January 2019

Optimising orbit counting of arbitrary order by equation selection

Authors: Ine Melckenbeeck, Pieter Audenaert, Thomas Van Parys, Yves Van De Peer, Didier Colle and Mario Pickavet
Content type: Software
| 15 January 2019

pblat: a multithread blat algorithm speeding up aligning sequences to genomes

Authors: Meng Wang and Lei Kong
Content type: Methodology article
| 15 January 2019

iRODS metadata management for a cancer genome analysis workflow

Authors: Lech Nieroda, Lukas Maas, Scott Thiebes, Ulrich Lang, Ali Sunyaev, Viktor Achter and Martin Peifer
Content type: Software
| 15 January 2019

SMoLR: visualization and analysis of single-molecule localization microscopy data in R

Authors: Maarten W. Paul, H. Martijn de Gruiter, Zhanmin Lin, Willy M. Baarends, Wiggert A. van Cappellen, Adriaan B. Houtsmuller and Johan A. Slotman

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Content type: Research article
| 9 June 2014

QMachine: commodity supercomputing in web browsers

Authors: Sean R Wilkinson and Jonas S Almeida
Content type: Software
| 4 August 2011

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Authors: Bo Li and Colin N Dewey
Content type: Software
| 29 December 2008

WGCNA: an R package for weighted correlation network analysis

Authors: Peter Langfelder and Steve Horvath
Content type: Research article
| 9 March 2013

A comparison of methods for differential expression analysis of RNA-seq data

Authors: Charlotte Soneson and Mauro Delorenzi
Content type: Research article
| 17 November 2006

Novel methods for secondary structure determination using low wavelength (VUV) circular dichroism spectroscopic data

Authors: Jonathan G Lees, Andrew J Miles, Robert W Janes and B A Wallace

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Aims and scope

BMC Bioinformatics is an open access, peer-reviewed journal that considers articles on all aspects of the development, testing and novel application of computational and statistical methods for the modeling and analysis of all kinds of biological data, as well as other areas of computational biology.

Editor

Alison Cuff, BioMed Central

Section Editors

John S Garavelli, University of Delaware
Lukasz Kurgan, Virginia Commonwealth University
Hanchuan Peng, Allen Institute for Brain Science
Graziano Pesole, University of Bari
Olivier Poch, ICube Laboratory, Strasbourg
João Setubal, Universidade de São Paulo
Hagit Shatkay, University of Delaware
Jean-Philippe Vert, Mines ParisTech

Lukasz Kurgan, Section Editor

Structural analysis

BMC Series Editorial Site

The BMC Series Editorial site serves as a home for editorial board resources and as an online community, facilitating interaction and networking between the editorial board and the BMC series in-house team.

BMC Series blog

Highlights of the BMC series: December 2018

11 January 2019
Succeeding as a woman in biomedical engineering

09 January 2019
Lessons learned and best practices from the Polio Eradication Programme in Nigeria

13 December 2018

Latest Tweets

BMC Bioinformatics

Announcement: New Sequence Analysis Section

Call for papers: Machine Learning and Artificial Intelligence in Bioinformatics

Call for papers: Computational Analysis of Biological Images

Articles

MITK-ModelFit: A generic open-source framework for model fits and their exploration in medical imaging – design, implementation and application on the example of DCE-MRI

Optimising orbit counting of arbitrary order by equation selection

pblat: a multithread blat algorithm speeding up aligning sequences to genomes

iRODS metadata management for a cancer genome analysis workflow

SMoLR: visualization and analysis of single-molecule localization microscopy data in R

QMachine: commodity supercomputing in web browsers

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

WGCNA: an R package for weighted correlation network analysis

A comparison of methods for differential expression analysis of RNA-seq data

Novel methods for secondary structure determination using low wavelength (VUV) circular dichroism spectroscopic data

Aims and scope

Editor

Section Editors

Lukasz Kurgan, Section Editor

Structural analysis

BMC Series Editorial Site

BMC Series blog

Highlights of the BMC series: December 2018

Succeeding as a woman in biomedical engineering

Lessons learned and best practices from the Polio Eradication Programme in Nigeria

Latest Tweets

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2017 Journal Metrics

BMC Bioinformatics

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