BMC Bioinformatics

Announcing In Review - now available in BMC Bioinformatics

BMC Bioinformatics, in partnership with Research Square, is launching In Review. This new option provides authors with on-demand information on the status of their manuscript, enables them to share their work with funders and their research community, and allows their colleagues to comment and collaborate - all whilst their manuscript is under review.

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Attendance at the ISMB/ECCB 2019 conference

The Editor of BMC Bioinformatics is pleased to be attending the ISMB/ECCB 2019 conference in Basel, Switzerland from July 21^st to July 25^th. Please do visit us at the Springer Nature booth! For more information on the conference, including how to register to attend, please visit the conference website.

Content type: Software
| 17 June 2019

FastProNGS: fast preprocessing of next-generation sequencing reads

Authors: Xiaoshuang Liu, Zhenhe Yan, Chao Wu, Yang Yang, Xiaomin Li and Guangxin Zhang
Content type: Software
| 17 June 2019

Laboratory information management software for engineered mini-protein therapeutic workflow

Authors: Mi-Youn Brusniak, Hector Ramos, Bernard Lee and James M. Olson
Content type: Research article
| 17 June 2019

Performance assessment of variant calling pipelines using human whole exome sequencing and simulated data

Authors: Manojkumar Kumaran, Umadevi Subramanian and Bharanidharan Devarajan
Content type: Research article
| 17 June 2019

Machine learning with the TCGA-HNSC dataset: improving usability by addressing inconsistency, sparsity, and high-dimensionality

Authors: Michael C. Rendleman, John M. Buatti, Terry A. Braun, Brian J. Smith, Chibuzo Nwakama, Reinhard R. Beichel, Bart Brown and Thomas L. Casavant
Content type: Software
| 17 June 2019

Aneuvis: web-based exploration of numerical chromosomal variation in single cells

Authors: Daniel G. Piqué, Grasiella A. Andriani, Elaine Maggi, Samuel E. Zimmerman, John M. Greally, Cristina Montagna and Jessica C. Mar

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Content type: Research article
| 9 June 2014

QMachine: commodity supercomputing in web browsers

Authors: Sean R Wilkinson and Jonas S Almeida
Content type: Software
| 4 August 2011

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Authors: Bo Li and Colin N Dewey
Content type: Software
| 29 December 2008

WGCNA: an R package for weighted correlation network analysis

Authors: Peter Langfelder and Steve Horvath
Content type: Research article
| 9 March 2013

A comparison of methods for differential expression analysis of RNA-seq data

Authors: Charlotte Soneson and Mauro Delorenzi
Content type: Research article
| 17 November 2006

Novel methods for secondary structure determination using low wavelength (VUV) circular dichroism spectroscopic data

Authors: Jonathan G Lees, Andrew J Miles, Robert W Janes and B A Wallace

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Aims and scope

BMC Bioinformatics is an open access, peer-reviewed journal that considers articles on all aspects of the development, testing and novel application of computational and statistical methods for the modeling and analysis of all kinds of biological data, as well as other areas of computational biology.

Editor

Alison Cuff, BioMed Central

Manuscript Editor

Cecilia Pennica, BioMed Central

Assistant Editor

Danielle Talbot, BioMed Central

Section Editors

Lukasz Kurgan, Virginia Commonwealth University
João Setubal, Universidade de São Paulo
Jens Stoye, Universität Bielefeld
Karin Verspoor, The University of Melbourne
Jean-Philippe Vert, Mines ParisTech

Journal Sections

Analysis and modelling of complex systems
Comparative genomics
Data visualization
Imaging, and image analysis
Knowledge-based analysis
Networks analysis
Novel computational methods for the analysis of biological systems
Proteomics
Sequence analysis
Structural analysis
Transcriptome analysis

Lukasz Kurgan, Section Editor

Structural analysis

BMC Series Editorial Site

The BMC Series Editorial site serves as a home for editorial board resources and as an online community, facilitating interaction and networking between the editorial board and the BMC series in-house team.

BMC Series blog

Highlights of the BMC Series: May 2019

17 June 2019
Better care through technology? Carers’ experience of assistive technology use in dementia

14 June 2019
The unintended health consequence of Trump’s push for immigration reform

05 June 2019

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BMC Bioinformatics

Announcing In Review - now available in BMC Bioinformatics

Attendance at the ISMB/ECCB 2019 conference

Articles

FastProNGS: fast preprocessing of next-generation sequencing reads

Laboratory information management software for engineered mini-protein therapeutic workflow

Performance assessment of variant calling pipelines using human whole exome sequencing and simulated data

Machine learning with the TCGA-HNSC dataset: improving usability by addressing inconsistency, sparsity, and high-dimensionality

Aneuvis: web-based exploration of numerical chromosomal variation in single cells

QMachine: commodity supercomputing in web browsers

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

WGCNA: an R package for weighted correlation network analysis

A comparison of methods for differential expression analysis of RNA-seq data

Novel methods for secondary structure determination using low wavelength (VUV) circular dichroism spectroscopic data

Aims and scope

Editor

Manuscript Editor

Assistant Editor

Section Editors

Journal Sections

Lukasz Kurgan, Section Editor

Structural analysis

BMC Series Editorial Site

BMC Series blog

Highlights of the BMC Series: May 2019

Better care through technology? Carers’ experience of assistive technology use in dementia

The unintended health consequence of Trump’s push for immigration reform

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2017 Journal Metrics

BMC Bioinformatics

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