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Featured blog: A Year in Bioinformatics

As we begin a fresh new year, the inhouse editors of BMC Bioinformatics look back over some of the fascinating articles published in 2017.

Content type: Research article
| 17 July 2018

Random forest versus logistic regression: a large-scale benchmark experiment

Authors: Raphael Couronné, Philipp Probst and Anne-Laure Boulesteix
Content type: Software
| 17 July 2018

HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data

Authors: Saurabh Baheti, Xiaojia Tang, Daniel R. O’Brien, Nicholas Chia, Lewis R. Roberts, Heidi Nelson, Judy C. Boughey, Liewei Wang, Matthew P. Goetz, Jean-Pierre A. Kocher and Krishna R. Kalari
Content type: Methodology article
| 16 July 2018

GtTR: Bayesian estimation of absolute tandem repeat copy number using sequence capture and high throughput sequencing

Authors: Devika Ganesamoorthy, Minh Duc Cao, Tania Duarte, Wenhan Chen and Lachlan Coin
Content type: Research article
| 16 July 2018

Discovering themes in biomedical literature using a projection-based algorithm

Authors: Lana Yeganova, Sun Kim, Grigory Balasanov and W. John Wilbur
Content type: Software
| 16 July 2018

CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata

Authors: Syed Ahmad Chan Bukhari, Marcos Martínez-Romero, Martin J. O’ Connor, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen, Kei-Hoi Cheung and Steven H. Kleinstein

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Content type: Research article
| 9 June 2014

QMachine: commodity supercomputing in web browsers

Authors: Sean R Wilkinson and Jonas S Almeida
Content type: Software
| 4 August 2011

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Authors: Bo Li and Colin N Dewey
Content type: Research article
| 17 November 2006

Novel methods for secondary structure determination using low wavelength (VUV) circular dichroism spectroscopic data

Authors: Jonathan G Lees, Andrew J Miles, Robert W Janes and B A Wallace
Content type: Research article
| 9 March 2013

A comparison of methods for differential expression analysis of RNA-seq data

Authors: Charlotte Soneson and Mauro Delorenzi
Content type: Software
| 29 December 2008

WGCNA: an R package for weighted correlation network analysis

Authors: Peter Langfelder and Steve Horvath

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Aims and scope

BMC Bioinformatics is an open access, peer-reviewed journal that considers articles on all aspects of the development, testing and novel application of computational and statistical methods for the modeling and analysis of all kinds of biological data, as well as other areas of computational biology.

Editor

Alison Cuff, BioMed Central

Section Editors

John S Garavelli, University of Delaware
Lukasz Kurgan, Virginia Commonwealth University
Adam Olshen, University of California, San Francisco
Hanchuan Peng, Allen Institute for Brain Science
Graziano Pesole, University of Bari
Olivier Poch, ICube Laboratory, Strasbourg
João Setubal, Universidade de São Paulo
Hagit Shatkay, University of Delaware
Jean-Philippe Vert, Mines ParisTech

Lukasz Kurgan, Section Editor

Structural analysis

BMC Series blog

Chronic sleep deprivation could be an important driver of depression in young women

16 July 2018
Brains versus brawn: reduced brain investment in army ant soldiers

13 July 2018
Deep genetic divergence among Bale monkeys in continuous forest and forest fragments

10 July 2018

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Get credit for your data

Featured blog: A Year in Bioinformatics

Articles

Random forest versus logistic regression: a large-scale benchmark experiment

HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data

GtTR: Bayesian estimation of absolute tandem repeat copy number using sequence capture and high throughput sequencing

Discovering themes in biomedical literature using a projection-based algorithm

CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata

QMachine: commodity supercomputing in web browsers

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Novel methods for secondary structure determination using low wavelength (VUV) circular dichroism spectroscopic data

A comparison of methods for differential expression analysis of RNA-seq data

WGCNA: an R package for weighted correlation network analysis

Aims and scope

Editor

Section Editors

Lukasz Kurgan, Section Editor

Structural analysis

BMC Series blog

Chronic sleep deprivation could be an important driver of depression in young women

Brains versus brawn: reduced brain investment in army ant soldiers

Deep genetic divergence among Bale monkeys in continuous forest and forest fragments

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BMC Bioinformatics

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