BMC Bioinformatics

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Announcement: New Sequence Analysis Section

The sections "Sequence Analysis (methods)" and "Sequence Analysis (applications)" in BMC Bioinformatics have been merged into one new section! Read our blog post to find out more.

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Call for papers: Machine Learning and Artificial Intelligence in Bioinformatics

BMC Bioinformatics are excited to announce the launch of a new section, "Machine Learning and Artificial Intelligence in Bioinformatics" lead by Section Editor Professor Jean-Philippe Vert.

To celebrate this, we are also launching a new thematic series "Machine learning for computational and systems biology".

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Call for papers: Computational Analysis of Biological Images

BMC Bioinformatics are also excited to announce the launch of the sections “Imaging and Image analysis” and “Data Visualization” sections, replacing our “Imaging, image analysis and data visualization” section.

To celebrate this, we are launching the series "Computational analysis of biological Images", lead by Guest Editor Professor Ge Yang.

Content type: Software
| 15 February 2019

BioVR: a platform for virtual reality assisted biological data integration and visualization

Authors: Jimmy F. Zhang, Alex R. Paciorkowski, Paul A. Craig and Feng Cui
Content type: Methodology article
| 15 February 2019

Iterative unsupervised domain adaptation for generalized cell detection from brightfield z-stacks

Authors: Kaisa Liimatainen, Lauri Kananen, Leena Latonen and Pekka Ruusuvuori
Content type: Methodology article
| 15 February 2019

Parameter estimation in models of biological oscillators: an automated regularised estimation approach

Authors: Jake Alan Pitt and Julio R. Banga
Content type: Software
| 15 February 2019

Functional Heatmap: an automated and interactive pattern recognition tool to integrate time with multi-omics assays

Authors: Joshua R. Williams, Ruoting Yang, John L. Clifford, Daniel Watson, Ross Campbell, Derese Getnet, Raina Kumar, Rasha Hammamieh and Marti Jett
Content type: Software
| 15 February 2019

FunMappOne: a tool to hierarchically organize and visually navigate functional gene annotations in multiple experiments

Authors: Giovanni Scala, Angela Serra, Veer Singh Marwah, Laura Aliisa Saarimäki and Dario Greco

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Content type: Research article
| 9 June 2014

QMachine: commodity supercomputing in web browsers

Authors: Sean R Wilkinson and Jonas S Almeida
Content type: Software
| 4 August 2011

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Authors: Bo Li and Colin N Dewey
Content type: Software
| 29 December 2008

WGCNA: an R package for weighted correlation network analysis

Authors: Peter Langfelder and Steve Horvath
Content type: Research article
| 9 March 2013

A comparison of methods for differential expression analysis of RNA-seq data

Authors: Charlotte Soneson and Mauro Delorenzi
Content type: Research article
| 17 November 2006

Novel methods for secondary structure determination using low wavelength (VUV) circular dichroism spectroscopic data

Authors: Jonathan G Lees, Andrew J Miles, Robert W Janes and B A Wallace

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Aims and scope

BMC Bioinformatics is an open access, peer-reviewed journal that considers articles on all aspects of the development, testing and novel application of computational and statistical methods for the modeling and analysis of all kinds of biological data, as well as other areas of computational biology.

Editor

Alison Cuff, BioMed Central

Section Editors

Lukasz Kurgan, Virginia Commonwealth University
João Setubal, Universidade de São Paulo
Jens Stoye, Universität Bielefeld
Karin Verspoor, The University of Melbourne
Jean-Philippe Vert, Mines ParisTech

Journal Sections

Analysis and modelling of complex systems
Comparative genomics
Data visualization
Imaging, and image analysis
Knowledge-based analysis
Networks analysis
Novel computational methods for the analysis of biological systems
Proteomics
Sequence analysis
Structural analysis
Transcriptome analysis

Lukasz Kurgan, Section Editor

Structural analysis

BMC Series Editorial Site

The BMC Series Editorial site serves as a home for editorial board resources and as an online community, facilitating interaction and networking between the editorial board and the BMC series in-house team.

BMC Series blog

Respectful maternity care – the way forward

15 February 2019
Highlights of the BMC Series: January 2019

14 February 2019
The obesity-paradox: impact of body composition on cancer survival

12 February 2019

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BMC Bioinformatics

Announcement: New Sequence Analysis Section

Call for papers: Machine Learning and Artificial Intelligence in Bioinformatics

Call for papers: Computational Analysis of Biological Images

Articles

BioVR: a platform for virtual reality assisted biological data integration and visualization

Iterative unsupervised domain adaptation for generalized cell detection from brightfield z-stacks

Parameter estimation in models of biological oscillators: an automated regularised estimation approach

Functional Heatmap: an automated and interactive pattern recognition tool to integrate time with multi-omics assays

FunMappOne: a tool to hierarchically organize and visually navigate functional gene annotations in multiple experiments

QMachine: commodity supercomputing in web browsers

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

WGCNA: an R package for weighted correlation network analysis

A comparison of methods for differential expression analysis of RNA-seq data

Novel methods for secondary structure determination using low wavelength (VUV) circular dichroism spectroscopic data

Aims and scope

Editor

Section Editors

Journal Sections

Lukasz Kurgan, Section Editor

Structural analysis

BMC Series Editorial Site

BMC Series blog

Respectful maternity care – the way forward

Highlights of the BMC Series: January 2019

The obesity-paradox: impact of body composition on cancer survival

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