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Featured blog: A Year in Bioinformatics

As we begin a fresh new year, the inhouse editors of BMC Bioinformatics look back over some of the fascinating articles published in 2017.

Content type: Software
| 20 April 2018

SECIMTools: a suite of metabolomics data analysis tools

Authors: Alexander S. Kirpich, Miguel Ibarra, Oleksandr Moskalenko, Justin M. Fear, Joseph Gerken, Xinlei Mi, Ali Ashrafi, Alison M. Morse and Lauren M. McIntyre
Content type: Database
| 20 April 2018

SpirPep: an in silico digestion-based platform to assist bioactive peptides discovery from a genome-wide database

Authors: Krittima Anekthanakul, Apiradee Hongsthong, Jittisak Senachak and Marasri Ruengjitchatchawalya
Content type: Software
| 20 April 2018

ClustAGE: a tool for clustering and distribution analysis of bacterial accessory genomic elements

Authors: Egon A. Ozer
Content type: Methodology article
| 19 April 2018

A study on fast calling variants from next-generation sequencing data using decision tree

Authors: Zhentang Li, Yi Wang and Fei Wang
Content type: Research article
| 19 April 2018

A site specific model and analysis of the neutral somatic mutation rate in whole-genome cancer data

Authors: Johanna Bertl, Qianyun Guo, Malene Juul, Søren Besenbacher, Morten Muhlig Nielsen, Henrik Hornshøj, Jakob Skou Pedersen and Asger Hobolth

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Content type: Research article
| 9 June 2014

QMachine: commodity supercomputing in web browsers

Authors: Sean R Wilkinson and Jonas S Almeida
Content type: Software
| 4 August 2011

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Authors: Bo Li and Colin N Dewey
Content type: Research article
| 17 November 2006

Novel methods for secondary structure determination using low wavelength (VUV) circular dichroism spectroscopic data

Authors: Jonathan G Lees, Andrew J Miles, Robert W Janes and B A Wallace
Content type: Research article
| 9 March 2013

A comparison of methods for differential expression analysis of RNA-seq data

Authors: Charlotte Soneson and Mauro Delorenzi
Content type: Software
| 17 January 2017

MultiDataSet: an R package for encapsulating multiple data sets with application to omic data integration

Authors: Carles Hernandez-Ferrer, Carlos Ruiz-Arenas, Alba Beltran-Gomila and Juan R. González

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Aims and scope

BMC Bioinformatics is an open access, peer-reviewed journal that considers articles on all aspects of the development, testing and novel application of computational and statistical methods for the modeling and analysis of all kinds of biological data, as well as other areas of computational biology.

Editor

Alison Cuff, BioMed Central

Section Editors

John S Garavelli, University of Delaware
Lukasz Kurgan, Virginia Commonwealth University
Adam Olshen, University of California, San Francisco
Hanchuan Peng, Allen Institute for Brain Science
Graziano Pesole, University of Bari
Olivier Poch, ICube Laboratory, Strasbourg
João Setubal, Universidade de São Paulo
Hagit Shatkay, University of Delaware
Jean-Philippe Vert, Mines ParisTech

Lukasz Kurgan, Section Editor

Structural analysis

BMC Series blog

Attention to metabolic energy disturbance is needed to treat relapse of heroin

20 April 2018
New thematic series: Veterinary antimicrobial resistance and antimicrobial use

19 April 2018
Speedy species divergence and the curious case of the blind cavefish

18 April 2018

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Get credit for your data

Featured blog: A Year in Bioinformatics

Articles

SECIMTools: a suite of metabolomics data analysis tools

SpirPep: an in silico digestion-based platform to assist bioactive peptides discovery from a genome-wide database

ClustAGE: a tool for clustering and distribution analysis of bacterial accessory genomic elements

A study on fast calling variants from next-generation sequencing data using decision tree

A site specific model and analysis of the neutral somatic mutation rate in whole-genome cancer data

QMachine: commodity supercomputing in web browsers

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Novel methods for secondary structure determination using low wavelength (VUV) circular dichroism spectroscopic data

A comparison of methods for differential expression analysis of RNA-seq data

MultiDataSet: an R package for encapsulating multiple data sets with application to omic data integration

Aims and scope

Editor

Section Editors

Lukasz Kurgan, Section Editor

Structural analysis

BMC Series blog

Attention to metabolic energy disturbance is needed to treat relapse of heroin

New thematic series: Veterinary antimicrobial resistance and antimicrobial use

Speedy species divergence and the curious case of the blind cavefish

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2016 Journal Metrics

BMC Bioinformatics

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