BMC Bioinformatics

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Featured blog: A Year in Bioinformatics

As we begin a fresh new year, the inhouse editors of BMC Bioinformatics look back over some of the fascinating articles published in 2017.

Content type: Methodology article
| 25 May 2018

polyClustR: defining communities of reconciled cancer subtypes with biological and prognostic significance

Authors: Katherine Eason, Gift Nyamundanda and Anguraj Sadanandam
Content type: Software
| 25 May 2018

QTLTableMiner⁺⁺: semantic mining of QTL tables in scientific articles

Authors: Gurnoor Singh, Arnold Kuzniar, Erik M. van Mulligen, Anand Gavai, Christian W. Bachem, Richard G.F. Visser and Richard Finkers
Content type: Methodology article
| 23 May 2018

NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data

Authors: Li Fang, Jiang Hu, Depeng Wang and Kai Wang
Content type: Database
| 23 May 2018

A website to identify shared genes in Saccharomyces cerevisiae homozygous deletion library screens

Authors: Mark D. Temple
Content type: Software
| 22 May 2018

NPBSS: a new PacBio sequencing simulator for generating the continuous long reads with an empirical model

Authors: Ze-Gang Wei and Shao-Wu Zhang

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Content type: Research article
| 9 June 2014

QMachine: commodity supercomputing in web browsers

Authors: Sean R Wilkinson and Jonas S Almeida
Content type: Software
| 4 August 2011

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Authors: Bo Li and Colin N Dewey
Content type: Research article
| 17 November 2006

Novel methods for secondary structure determination using low wavelength (VUV) circular dichroism spectroscopic data

Authors: Jonathan G Lees, Andrew J Miles, Robert W Janes and B A Wallace
Content type: Research article
| 9 March 2013

A comparison of methods for differential expression analysis of RNA-seq data

Authors: Charlotte Soneson and Mauro Delorenzi
Content type: Software
| 29 December 2008

WGCNA: an R package for weighted correlation network analysis

Authors: Peter Langfelder and Steve Horvath

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Aims and scope

BMC Bioinformatics is an open access, peer-reviewed journal that considers articles on all aspects of the development, testing and novel application of computational and statistical methods for the modeling and analysis of all kinds of biological data, as well as other areas of computational biology.

Editor

Alison Cuff, BioMed Central

Section Editors

John S Garavelli, University of Delaware
Lukasz Kurgan, Virginia Commonwealth University
Adam Olshen, University of California, San Francisco
Hanchuan Peng, Allen Institute for Brain Science
Graziano Pesole, University of Bari
Olivier Poch, ICube Laboratory, Strasbourg
João Setubal, Universidade de São Paulo
Hagit Shatkay, University of Delaware
Jean-Philippe Vert, Mines ParisTech

Lukasz Kurgan, Section Editor

Structural analysis

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Get credit for your data

Featured blog: A Year in Bioinformatics

Articles

polyClustR: defining communities of reconciled cancer subtypes with biological and prognostic significance

QTLTableMiner⁺⁺: semantic mining of QTL tables in scientific articles

NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data

A website to identify shared genes in Saccharomyces cerevisiae homozygous deletion library screens

NPBSS: a new PacBio sequencing simulator for generating the continuous long reads with an empirical model

QMachine: commodity supercomputing in web browsers

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Novel methods for secondary structure determination using low wavelength (VUV) circular dichroism spectroscopic data

A comparison of methods for differential expression analysis of RNA-seq data

WGCNA: an R package for weighted correlation network analysis

Aims and scope

Editor

Section Editors

Lukasz Kurgan, Section Editor

Structural analysis

BMC Series blog

What do color vision and red coloration in birds have in common? A study of ‘The Red Gene’

Better training could help health professionals identify and support pregnant women with eating disorders

Rehabilitation and economic recovery for torture survivors

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