BMC Bioinformatics

Collections open to submissions

Prediction and modelling of RNA structure and interactions

Guest edited by Anže Božič, Letizia Chiodo and Luca Tesei

Evolutionary studies

Guest edited by Shibiao Wan

Functional annotation and pathway analysis

Guest edited by Giuseppe Agapito

Mass spectrometry-based proteomics: advances in data processing

Guest edited by Andreas Hildebrandt

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Editor's Picks

RegiSTORM: channel registration for multi-color stochastic optical reconstruction microscopy

New Content Item Tidyproteomics: an open-source R package and data object for quantitative proteomics post analysis and visualization

An oscillating reaction network with an exact closed form solution in the time domain

Authors: Joseph Hellerstein

Content type: Research 9 December 2023
Hierarchical classification-based pan-cancer methylation analysis to classify primary cancer

Authors: Youpeng Yang, Qiuhong Zeng, Gaotong Liu, Shiyao Zheng, Tianyang Luo, Yibin Guo, Jia Tang and Yi Huang

Content type: Research 8 December 2023
Allele-specific binding (ASB) analyzer for annotation of allele-specific binding SNPs

Authors: Ying Li, Xiao-Ou Zhang, Yan Liu and Aiping Lu

Content type: Software 8 December 2023
Lokatt: a hybrid DNA nanopore basecaller with an explicit duration hidden Markov model and a residual LSTM network

Authors: Xuechun Xu, Nayanika Bhalla, Patrik Ståhl and Joakim Jaldén

Content type: Research 7 December 2023
pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods

Authors: Abdelkader Behdenna, Maximilien Colange, Julien Haziza, Aryo Gema, Guillaume Appé, Chloé-Agathe Azencott and Akpéli Nordor

Content type: Software 7 December 2023

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QMachine: commodity supercomputing in web browsers

Authors: Sean R Wilkinson and Jonas S Almeida

Content type: Research article 9 June 2014
WGCNA: an R package for weighted correlation network analysis

Authors: Peter Langfelder and Steve Horvath

Content type: Software 29 December 2008
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Authors: Bo Li and Colin N Dewey

Content type: Software 4 August 2011

The Related Article to this article has been published in Nature Protocols 2013 8:nprot.2013.084
Statistical analysis of real-time PCR data

Authors: Joshua S Yuan, Ann Reed, Feng Chen and C Neal Stewart Jr

Content type: Methodology article 22 February 2006
Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

Authors: Jian Ye, George Coulouris, Irena Zaretskaya, Ioana Cutcutache, Steve Rozen and Thomas L Madden

Content type: Software 18 June 2012

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BMC Bioinformatics is an open access, peer-reviewed journal that considers articles describing novel computational algorithms and software, models and tools, including statistical methods, machine learning and artificial intelligence, as well as systems biology.

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BMC Bioinformatics

Collections open to submissions

Prediction and modelling of RNA structure and interactions

Evolutionary studies

Functional annotation and pathway analysis

Mass spectrometry-based proteomics: advances in data processing

Editor's Picks

Articles

An oscillating reaction network with an exact closed form solution in the time domain

Hierarchical classification-based pan-cancer methylation analysis to classify primary cancer

Allele-specific binding (ASB) analyzer for annotation of allele-specific binding SNPs

Lokatt: a hybrid DNA nanopore basecaller with an explicit duration hidden Markov model and a residual LSTM network

pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods

QMachine: commodity supercomputing in web browsers

WGCNA: an R package for weighted correlation network analysis

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Statistical analysis of real-time PCR data

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

Aims and scope

Become an Editorial Board Member

Featured blog

Spotlight On

Climate Change

BMC Series Blog

BMC Environmental Science is now open for submissions!

Exciting news: BMC Methods now open for submissions!

World AIDS Day 2023: Highlights from the BMC Series

Latest Tweets

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