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Table 1 The 20 highest scoring amino acid patterns.

From: Detection of discriminative sequence patterns in the neighborhood of proline cis peptide bonds and their functional annotation

Exact pattern discovery Chemical equivalency set Structural equivalency set
Pattern Score Significance Pattern Score Significance Pattern Score Significance
FE.P...F 1 -15.53 [ST]P.NPTG 1 -24.47 [DLN]. [DLN]... [KMR]. [ITV] [CS] 1 -15.21
SP.NP.G 0.99 -19.82 [ST]PNNP.G 1 -25.08 [CS]..NPTG 1 -19.71
V...EP...H 0.99 -15.40 [ILMV]..P.NP.G 1 -18.46 SP.NP.G 0.99 -19.82
GPY.G 0.99 -14.93 [ST]PN..T [AG] 1 -18.51 [CS]... [FHWY]. [FHWY].N 0.99 -12.60
G...GPY 0.98 -15.08 [ST]P.NP.G 0.99 -18.81 [EQ].P [FHWY] [ITV].V 0.99 -17.76
P.NPTG 0.98 -19.68 [ILMV] [KR]EP [FY] 0.99 -17.54 [FHWY]P.E [FHWY]I 0.99 -19.11
PNNP.G 0.98 -20.06 SP.NP.G 0.99 -19.82 [ITV]..P.NP.G 0.99 -18.80
PY..SG 0.98 -14.71 [ILMV] [KR]EPF 0.99 -17.91 GPY.G 0.99 -14.93
NNPT 0.97 -14.60 [ILMV].... [QN]P.G 0.99 -12.62 [CS].PNNP 0.99 -19.63
V.....N..T 0.97 -8.11 [QN]..FV [FY] 0.99 -13.97 V...EP...H 0.99 -15.40
P..YP.K 0.97 -15.59 E.GP [FY] 0.99 -14.82 [ITV].SP. [DLN]P 0.99 -17.67
N...P.PE 0.97 -14.86 GPY.G 0.99 -14.93 PY.. [CS]G 0.98 -14.52
GPY...G 0.97 -15.25 PNNP [ST] 0.99 -19.40 P.NPTG 0.98 -19.68
SP.N..G 0.97 -14.40 [ILMV]. [ST].N...G 0.99 -12.25 G...GPY 0.98 -15.08
S..NP.G 0.96 -14.26 GY.. [ILMV].K 0.99 -13.20 PNNP.G 0.98 -20.06
T...NP.G 0.96 -14.38 C [ST]..NP 0.99 -14.33 [ITV] [FHWY]E...F 0.98 -13.02
PYG.S 0.96 -15.07 V...EP...H 0.99 -15.40 PY..SG 0.98 -14.71
QL.......Y 0.96 -9.12 [QN] [ST]P.N. [ST] 0.99 -17.92 S..P.D [KMR] [DLN] 0.98 -18.12
R...Y.P 0.96 -9.35 [ILMV]... [ST]P.N.T 0.99 -17.30 K.P [FHWY]T.. [ITV] 0.98 -18.59
N.K..F 0.96 -9.03 P [FY]PE. [AG] 0.99 -19.53 [KMR]..GP [FHWY].. [ITV] 0.98 -18.21