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Table 1 The 20 highest scoring amino acid patterns.

From: Detection of discriminative sequence patterns in the neighborhood of proline cis peptide bonds and their functional annotation

Exact pattern discovery

Chemical equivalency set

Structural equivalency set

Pattern

Score

Significance

Pattern

Score

Significance

Pattern

Score

Significance

FE.P...F

1

-15.53

[ST]P.NPTG

1

-24.47

[DLN]. [DLN]... [KMR]. [ITV] [CS]

1

-15.21

SP.NP.G

0.99

-19.82

[ST]PNNP.G

1

-25.08

[CS]..NPTG

1

-19.71

V...EP...H

0.99

-15.40

[ILMV]..P.NP.G

1

-18.46

SP.NP.G

0.99

-19.82

GPY.G

0.99

-14.93

[ST]PN..T [AG]

1

-18.51

[CS]... [FHWY]. [FHWY].N

0.99

-12.60

G...GPY

0.98

-15.08

[ST]P.NP.G

0.99

-18.81

[EQ].P [FHWY] [ITV].V

0.99

-17.76

P.NPTG

0.98

-19.68

[ILMV] [KR]EP [FY]

0.99

-17.54

[FHWY]P.E [FHWY]I

0.99

-19.11

PNNP.G

0.98

-20.06

SP.NP.G

0.99

-19.82

[ITV]..P.NP.G

0.99

-18.80

PY..SG

0.98

-14.71

[ILMV] [KR]EPF

0.99

-17.91

GPY.G

0.99

-14.93

NNPT

0.97

-14.60

[ILMV].... [QN]P.G

0.99

-12.62

[CS].PNNP

0.99

-19.63

V.....N..T

0.97

-8.11

[QN]..FV [FY]

0.99

-13.97

V...EP...H

0.99

-15.40

P..YP.K

0.97

-15.59

E.GP [FY]

0.99

-14.82

[ITV].SP. [DLN]P

0.99

-17.67

N...P.PE

0.97

-14.86

GPY.G

0.99

-14.93

PY.. [CS]G

0.98

-14.52

GPY...G

0.97

-15.25

PNNP [ST]

0.99

-19.40

P.NPTG

0.98

-19.68

SP.N..G

0.97

-14.40

[ILMV]. [ST].N...G

0.99

-12.25

G...GPY

0.98

-15.08

S..NP.G

0.96

-14.26

GY.. [ILMV].K

0.99

-13.20

PNNP.G

0.98

-20.06

T...NP.G

0.96

-14.38

C [ST]..NP

0.99

-14.33

[ITV] [FHWY]E...F

0.98

-13.02

PYG.S

0.96

-15.07

V...EP...H

0.99

-15.40

PY..SG

0.98

-14.71

QL.......Y

0.96

-9.12

[QN] [ST]P.N. [ST]

0.99

-17.92

S..P.D [KMR] [DLN]

0.98

-18.12

R...Y.P

0.96

-9.35

[ILMV]... [ST]P.N.T

0.99

-17.30

K.P [FHWY]T.. [ITV]

0.98

-18.59

N.K..F

0.96

-9.03

P [FY]PE. [AG]

0.99

-19.53

[KMR]..GP [FHWY].. [ITV]

0.98

-18.21