Detection of discriminative sequence patterns in the neighborhood of proline cis peptide bonds and their functional annotation

Exarchos, Konstantinos P; Exarchos, Themis P; Papaloukas, Costas; Troganis, Anastassios N; Fotiadis, Dimitrios I

doi:10.1186/1471-2105-10-113

Table 3 Top-10 property patterns.

From: Detection of discriminative sequence patterns in the neighborhood of proline cis peptide bonds and their functional annotation

	Pattern	Score	Significance		Pattern	Score	Significance
Hydrophobic	100010.0.00	0.88	-25.622267	Aliphatic	111.0000010	0.90	-28.438190
	00011010.00	0.86	-29.127605		11100000010	0.89	-31.665638
	00011000111	0.86	-32.008152		111000.0010	0.89	-28.387123
	100010.000	0.85	-25.689735		111.00.0010	0.89	-25.159679
	10001000..0	0.85	-25.679390		101000101.0	0.88	-28.450298
	11101011000	0.85	-31.535349		1110001.1	0.87	-23.336674
	1000.00000	0.84	-26.223049		010.0010101	0.86	-28.455349
	1101011000	0.84	-28.097616		01..0010101	0.85	-25.175838
	0011010000	0.83	-29.159554		111.00100.0	0.85	-25.185696
	00.11010000	0.83	-29.148598		0100.001110	0.85	-28.344454
Polar	00011001000	0.87	-31.464071	Aromatic	11010..100	0.93	-23.787088
	00.11001000	0.86	-27.802887		1101...10	0.92	-17.538124
	00111001000	0.85	-31.448685		1101..010	0.91	-20.680222
	11000011000	0.84	-31.394987		1101.0.10	0.90	-20.681501
	00000000011	0.84	-31.472200		01.010.0010	0.87	-25.028446
	00101000001	0.83	-31.512842		010010100.0	0.88	-28.226509
	0001100.000	0.83	-27.699286		10010100.0	0.88	-25.118229
	11001000111	0.82	-31.390800		0.101000010	0.88	-28.193560
	11010000011	0.82	-31.397318		0.0.0010110	0.88	-24.919533
	110010.0111	0.81	-27.739485		01.010.001	0.87	-21.915537
Small	01011100101	0.84	-31.444056	Positive	110.10010	0.87	-23.358616
	11111101001	0.83	-31.323477		0.00011100	0.81	-24.565418
	10111100011	0.83	-31.408043		0000011100	0.80	-27.679506
	1011100101	0.82	-27.795000		---	---	---
	01101101001	0.82	-31.530676		---	---	---
	10111110100	0.81	-31.362995		---	---	---
	01101101.01	0.80	-27.816114		---	---	---
	0101110.101	0.80	-27.737080		---	---	---
	01101101101	0.80	-31.575062		---	---	---
	---	---	---		---	---	---
Proline	000001110.0	0.81	-29.866806	Negative	01.0.000011	0.80	-24.944452
	0000.1101	0.80	-23.843355		---	---	---
	000001101	0.80	-26.895651		---	---	---
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ISSN: 1471-2105

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