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Table 3 10 K breakpoint recovery results at the presence of missing data

From: Most parsimonious haplotype allele sharing determination

  0.5% 1% 1.5% 2% 2.5% 3%
Pedigree Precision Recall Precision Recall Precision Recall Precision Recall Precision Recall Precision Recall
2-2 0.998 0.968 0.998 0.926 0.997 0.941 0.998 0.937 0.987 0.946 1.000 0.944
2–3 0.983 0.969 0.997 0.968 0.989 0.970 0.998 0.967 0.993 0.967 0.989 0.948
2-3-1 0.994 0.973 0.994 0.959 0.986 0.959 0.986 0.947 0.988 0.952 0.992 0.968
2-3-2 0.981 0.968 0.981 0.971 0.984 0.947 0.984 0.947 0.985 0.950 0.985 0.945
2-3-3 0.989 0.974 0.967 0.967 0.990 0.962 0.962 0.962 0.969 0.950 0.983 0.958
2-3-5 0.974 0.972 0.966 0.966 0.964 0.960 0.960 0.961 0.970 0.954 0.959 0.951
2-4-3 0.984 0.964 0.985 0.960 0.985 0.953 0.986 0.964 0.978 0.950 0.99 0.956
2-5-4 0.980 0.952 0.984 0.953 0.979 0.950 0.984 0.940 0.983 0.939 0.980 0.932
2-5-5 0.980 0.961 0.971 0.958 0.980 0.947 0.983 0.947 0.982 0.935 0.973 0.930
2-6-5 0.985 0.952 0.987 0.952 0.984 0.939 0.983 0.930 0.982 0.922 0.984 0.911
Average 0.985 0.965 0.983 0.958 0.984 0.950 0.983 0.950 0.982 0.947 0.984 0.944
  1. Breakpoint recovery results: Average breakpoint recovery precision and recall by i Linker at the presence of 0.5–3% missing genotype data.