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Table 2 Sensitivity and FPR of SFP detection for various signal intensities in the canonical rice data in which the SFP number was one.

From: SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

< 2 2 – 2.5 2.5 – 3 3 ≤
  # of probe sets
< 2 186 6 0 0
2 – 2.5 322 1184 18 1
2.5 – 3 6 136 452 9
3 ≤ 0 5 115 422
  # of SFP probes judged by SNEP
< 2 10 3 0 0
2 – 2.5 70 338 24 0
2.5 – 3 8 99 415 9
3 ≤ 0 5 111 415
  Sensitivity
< 2 0.022 0.333 NA NA
2 – 2.5 0.034 0.164 0.722 0.000
2.5 – 3 0.167 0.529 0.750 0.667
3 ≤ NA 0.200 0.843 0.777
  FPR
< 2 0.600 0.333 NA NA
2 – 2.5 0.843 0.426 0.458 NA
2.5 – 3 0.875 0.273 0.183 0.333
3 ≤ NA 0.800 0.126 0.210
  1. . : median-intensities for Nipponbare and 93-11. NA: not available.