Table 2 Sensitivity and FPR of SFP detection for various signal intensities in the canonical rice data in which the SFP number was one.
From: SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
| < 2 | 2 – 2.5 | 2.5 – 3 | 3 ≤ |
|---|---|---|---|---|
| Â | # of probe sets | |||
< 2 | 186 | 6 | 0 | 0 |
2 – 2.5 | 322 | 1184 | 18 | 1 |
2.5 – 3 | 6 | 136 | 452 | 9 |
3 ≤ | 0 | 5 | 115 | 422 |
| Â | # of SFP probes judged by SNEP | |||
< 2 | 10 | 3 | 0 | 0 |
2 – 2.5 | 70 | 338 | 24 | 0 |
2.5 – 3 | 8 | 99 | 415 | 9 |
3 ≤ | 0 | 5 | 111 | 415 |
| Â | Sensitivity | |||
< 2 | 0.022 | 0.333 | NA | NA |
2 – 2.5 | 0.034 | 0.164 | 0.722 | 0.000 |
2.5 – 3 | 0.167 | 0.529 | 0.750 | 0.667 |
3 ≤ | NA | 0.200 | 0.843 | 0.777 |
| Â | FPR | |||
< 2 | 0.600 | 0.333 | NA | NA |
2 – 2.5 | 0.843 | 0.426 | 0.458 | NA |
2.5 – 3 | 0.875 | 0.273 | 0.183 | 0.333 |
3 ≤ | NA | 0.800 | 0.126 | 0.210 |
. 
: median-intensities for Nipponbare and 93-11. NA: not available.
. 
: median-intensities for Nipponbare and 93-11. NA: not available.