Figure 11
From: Tableau-based protein substructure search using quadratic programming
Superposition of serpin B/C sheet query hits. (a) Superposition of the top 10 hits to the serpin B/C sheet query substructure, generated by simple orthogonal transformation to minimize RMSD between C α atoms of the central residue in SSEs that are matched to each other between the query and the hit structure according to our method. (b) Multiple alignment of 5 of the top 10 hits generated by MUSTANG. Five are missing as they contain multiple chains which MUSTANG currently cannot process. Both images were generated with PyMOL.