Table 3 Selected protein complexes predicted by our COACH method using DIP data and their p-values
From: A core-attachment based method to detect protein complexes in PPI networks
ID | P-values | Predicted protein complexes | Real protein complexes | NA | # common proteins |
|---|---|---|---|---|---|
1 | 9.85e-33 | YBL084C YDL008W YDR118W YFR036W YGL240W YHR166C YKL022C YLR102C YLR127C YNL172W YOR249C | anaphase-promoting complex | 0.688 | 11 |
2 | 5.85e-30 | YBR154C YDL150W YDR045C YKL144C YKR025W YNL113W YNL151C YNR003C YOR116C YOR207C YOR224C YPR110C YPR190C | DNA-directed RNA polymerase III complex | 0.765 | 13 |
3 | 7.0e-25 | YCR035C YDL111C YDR280W YGR090W YGR095C YGR158C YGR195W YHR069C YHR081W YNL189W YNL232W YOL021C YOL142W YOR001W YOR076C | exosome (RNase complex) | 0.805 | 13 |
4 | 5.00e-24 | YBR081C YBR198C YBR253W YCL010C YDR167W YDR176W YDR216W YDR448W YGL112C YGR252W YHR099W YMR236W YPL254W | SAGA complex | 0.452 | 11 |
5 | 9.90e-23 | YBR081C YBR198C YDR167W YDR176W YDR392W YDR448W YEL009C YER148W YGL112C YGR274C YHR099W YMR236W YOL148C YPL254W YPR086W | SLIK (SAGA-like) complex | 0.475 | 11 |
6 | 6.61e-23 | YBL093C YBR193C YBR253W YCR081W YDL005C YDL140C YDR308C YER022W YGR104C YHR041C YHR058C YLR071C YNL236W YOL051W YOL135C YOR174W YPR070W | RNA polymerase II mediator complex | 0.602 | 16 |
7 | 1.57e-20 | YAR003W YBR175W YBR258C YDR469W YHR119W YKL018W YLR015W YPL138C | COMPASS complex | 1.0 | 8 |
8 | 1.36e-19 | YAL021C YCR093W YDL165W YDR443C YER068W YGR134W YGR274C YIL038C YNL288W YNR052C YPR072W | CCR4-NOT complex | 0.614 | 9 |
9 | 1.43e-15 | YBL105C YDL232W YEL002C YGL022W YGL226C-A YJL002C YMR149W YOR085W YOR103C YPL076W | OST complex | 0.71 | 8 |
10 | 1.66e-13 | YAL002W YDL077C YDR080W YLR148W YLR396C YMR231W YPL045W | HOPS complex | 1.0 | 7 |