Assay design software
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File Builder Assay-by-Design
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Autoprimer
|
iPLEX
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URL
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https://www2.appliedbiosystems.com/support/software/assaysbydesign/
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http://www.autoprimer.com/
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http://www.sequenom.com
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Assay name
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Letters, numbers, – (hyphen) only
|
Letters, numbers, – only
|
Letters, number, – only
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Space
|
Tab
|
Space
|
Space
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No. bases each side
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200–600
|
200
|
200
|
Allele [A/G]
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Common first
|
-
|
-
|
Additional information <other>
|
1 = 201 (assay position)
|
Masked sequence
|
-
|
Adjacent SNPs
|
N
|
IUPAC
|
Lower case
|
Masking
|
N
|
N
|
Lower case
|
Masked sequence
|
First sequence
|
Second sequence, not 25 bases either side of SNP
|
First sequence
|