Table 1 Bisulfite matching table after bitwise masking
From: BSMAP: whole genome bisulfite sequence MAPping program
Reference | Â | A (00) | C (01) | G (10) | T (11) |
|---|---|---|---|---|---|
Mask | Â | 11 (inactive) | 01 (active) | 11 (inactive) | 11 (inactive) |
Bisulfite Read | A(00) | 00 (match) | 01 | 10 | 11 |
| Â | C(01) | 10 | 00 (match) | 11 | 10 |
| Â | G(10) => A(00) if reference is C | 10 | 01 | 00 (match) | 01 |
| Â | T(11) => C(01) if reference is C | 11 | 00 (match) | 01 | 00 (match) |