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Table 1 Total number of unique peptides identified using MS/MS spectra interpretation algorithms for lysozyme, BSA and virus digests.

From: ETISEQ – an algorithm for automated elution time ion sequencing of concurrently fragmented peptides for mass spectrometry-based proteomics

 

Unique peptides^

 

Lysozyme

BSA

Virus

DDA

8 (60.5%)

21 (36.2%)

20

CDA – ETISEQ processed

7 (52.4%)

24 (32.3%)

15

CDA – no correlation processing

6 (52.4%)

19 (27.0%)

10

  1. ^ For lysozyme and BSA, the respective sequence coverage is shown in brackets. The data are generated by data dependent LC-MS/MS and CDA with and without ETISEQ processing. [See Additional file 1] for protein/peptide list.
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BMC Bioinformatics

ISSN: 1471-2105

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