Identification of novel DNA repair proteins via primary sequence, secondary structure, and homology

BMC Bioinformatics

Table 10 Relationship amongst detected transcripts and unique genes

Methodology	Threshold	No. Transcripts	No. Unique Genes	% Unique Genes
P	0.001	3330	2851	85.6%
	0.151	555	461	83.1%
PS	0.001	67393	56145	83.3%
	0.670	4144	3603	86.9%
PH	0.001	4403	3558	80.8%
	1.015	796	689	86.6%
BLAST	10^-3	4302	3492	81.1%
	10^-9	1419	1123	79.1%
Average Percentage of Unique Genes				83.3%
Standard Deviation				2.9%

The total number of detected protein transcripts and total number of resulting unique genes is given for each method using two thresholds derived from GO-PDB identification experiments. The average of 83.3% is in close agreement with findings in [7].

ISSN: 1471-2105