Identification of novel DNA repair proteins via primary sequence, secondary structure, and homology

BMC Bioinformatics

Table 14 Web Server Accuracy

Methodology	Threshold	True Positive Rate	False Positive Rate
P-3	0.001	64.6%	0.1%
	0.151	57.3%	0
PS-3–9	0.001	72.3%	2.4%
	0.670	53.1%	0
PH-3	0.001	65.0%	1.7%
	1.1015	7.9%	0
PSH-3–8	0.001	61.6%	1.7%
	0.727	39.5%	0
BLAST	10^-3	63.4%	1.7%
	10^-9	60.1%	0.7%

Metrics for interpreting the results produced by the INTREPED web server. For each of the five methods INTREPED employs, thresholds necessary for basic decision making and maximum TPR-0 rates are given. Each method and threshold pair provides the true positive and false positive rate based on identification experiments.

ISSN: 1471-2105