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Table 6 Classification: Nucleotide Excision Repair

From: Identification of novel DNA repair proteins via primary sequence, secondary structure, and homology

Seq. Similarity Pos/Neg
(% Pos)
Method AUC TPR-0 TPR-1% TPR-5%
   P 0.90 37.47 50.69 66.12
   PS 0.91 35.54 56.75 71.07
50% 363/1467
(20%)
PF 0.86 22.04 41.60 56.47
   BLAST 0.95 53.99 84.85 88.43
   PH 0.94 2.75 43.25 79.89
   PSH 0.95 4.68 56.75 87.88
   P 0.98 81.58 87.55 92.23
   PS 0.98 80.23 88.83 92.45
90% 1325/3320
(29%)
PF 0.88 25.89 39.77 63.77
   BLAST 0.98 0.00 94.19 97.13
   PH 0.98 4.15 75.02 95.25
   PSH 0.98 1.43 84.53 96.45
   P 0.98 37.65 89.27 94.16
   PS 0.98 65.19 90.41 93.16
0% 2106/5241
(29%)
PF 0.88 21.13 39.55 54.37
   BLAST 0.97 0.00 90.03 96.96
   PH 0.97 3.23 64.15 82.15
   PSH 0.98 11.49 79.49 91.36
  1. Experiments using Nucleotide Excision Repair (GO:0006289) as the type of protein to identify. "Pos/Neg" shows the number of NER-related and non-related proteins for a particular sequence similarity.