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Table 1 ArkDB Web Services

From: An XML transfer schema for exchange of genomic and genetic mapping data: implementation as a web service in a Taverna workflow

Service

Method

Parameters

ArkObjectService

fetchArkObject

objectAccession

SpeciesService

fetchAllSpecies

null

KaryotypeService

fetchSpeciesByAccession

speciesAccession

KaryotypeService

fetchNamedSpeciesKaryotype

speciesName

KaryotypeService

fetchAllSpeciesKaryotypes

null

KaryotypeService

fetchChromosomeForMap

mapAccession

MapService

fetchMapsForChromosome

speciesName

chromosomeName

MapService

fetchMapsForChromosomeAccession

chromosomeAccession

MapService

fetchMapsForAnalysis

analysisAccession

MapService

fetchAllMapsForSpecies

speciesName

MapService

fetchUncontainedMapsForSpecies

speciesName

MapService

fetchUnassignedMapsForSpecies

speciesName

MappingAnalysesService

fetchAnalysesForSpecies

speciesName

MappingAnalysesService

fetchAnalysesForMap

mapAccession

MarkerService

fetchMarkerByAccession

markerAccession

MappingService

fetchMappingsForMap

mapAccession

ArkWebService

Single access point for all Methods

 
  1. Services and WSDLs are exposed at http://www.thearkdb.org/ws/services/ (e.g. http://www.thearkdb.org/ws/services/ArkObjectService?wsdl). The WSDL at http://www.thearkdb.org/ws/xsdservice/ArkWebServicesTyped.wsdl uses the same services but specifies that returned documents conform to the GMD schema.