BMC Bioinformatics

Table 4 Block similarity among several methods of haplotype block partitioning.

From: Global haplotype partitioning for maximal associated SNP pairs

	HOT	MB	HB	MDL	GAM	GAB	GPG	GPF
HOT	1.00	0.32	0.31	0.16	0.13	0.26	0.39	0.40
MB	0.32	1.00	0.65	0.36	0.30	0.58	0.60	0.56
HB	0.31	0.65	1.00	0.41	0.35	0.60	0.56	0.54
MDL	0.16	0.36	0.41	1.00	0.54	0.42	0.30	0.29
GAM	0.13	0.30	0.35	0.54	1.00	0.41	0.25	0.24
GAB	0.26	0.58	0.60	0.42	0.41	1.00	0.57	0.55
GPG	0.39	0.60	0.56	0.30	0.25	0.57	1.00	0.88
GPF	0.40	0.56	0.54	0.29	0.24	0.55	0.88	1.00

The similarity measure indicates the proportion of SNP pairs commonly shared by different partitionings on ten ENCODE regions. See Table 1 for method abbreviations.

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