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Table 2 Results of simulation study: comparison of RS, GSEA and GLAPA. P-values for the first gene set for the three methods (columns) and five different scenarios (rows) described in the text.

From: Comparative study of gene set enrichment methods

  RS GLAPA GSEA
  P-value P-value1 P-value2 P-value
  mean se mean se mean se mean se
1 0.0177 0.0069 0.0678 0.0135 0.0173 0.0057 0.0002 0.0001
2 0.0005 0.0002 0.0152 0.0036 0.0007 0.0003 0.0002 0.0001
3 0.0004 0.0002 0.0064 0.0026 0.0003 0.0002 0 0
4 0.0126 0.0081 0.0073 0.0025 0.0002 9e-05 0.0166 0.0044
5 0 0 0.0001 8e-05 0 0 0.0877 0.0151