From: RCMAT: a regularized covariance matrix approach to testing gene sets
Gene Set | No. of Genes in Set | RCMAT p-value | Kong et al. p-value |
---|---|---|---|
c25_U133_probes | 64 | 0.0003 | 0.0039 |
MAP00600_Sphingoglycolipid_metabolism | 18 | 0.0018 | 0.0036 |
MAP00300_Lysine_biosynthesis | 5 | 0.002 | 0.0089 |
MAP00561_Glycerolipid_metabolism | 84 | 0.0028 | 0.7803 |
c29_U133_probes | 202 | 0.0033 | 0.0672 |
c33_U133_probes | 362 | 0.0034 | 0.1201 |
c23_U133_probes | 109 | 0.0035 | 0.1581 |
MAP00360_Phenylalanine_metabolism | 23 | 0.0036 | 0.0723 |
MAP00531_Glycosaminoglycan_degradation | 18 | 0.0043 | 0.0005 |
MAP00511_N_Glycan_degradation | 9 | 0.0072 | 0.0066 |
GLUCO_HG-U133A_probes | 46 | 0.0084 | 0.4585 |
GLYCOL_HG-U133A_probes | 31 | 0.0088 | 0.5699 |
MAP00910_Nitrogen_metabolism | 31 | 0.0094 | 0.0385 |
MAP00430_Taurine_and_hypotaurine_metabolism | 12 | 0.01 | 0.0888 |
mitochondr_HG-U133A_probes | 615 | 0.0107 | 0.05 |
MAP00650_Butanoate_metabolism | 38 | 0.0109 | 0.3458 |
human_mitoDB_6_2002_HG-U133A_probes | 594 | 0.0113 | 0.0381 |
c28_U133_probes | 288 | 0.0123 | 0.1947 |
MAP00252_Alanine_and_aspartate_metabolism | 35 | 0.0131 | 0.0472 |
c20_U133_probes | 270 | 0.0139 | 0.1125 |
MAP00190_Oxidative_phosphorylation | 75 | 0.0141 | 0.2173 |
c22_U133_probes | 194 | 0.0152 | 0.016 |
MAP00710_Carbon_fixation | 27 | 0.0152 | 0.0297 |
MAP00340_Histidine_metabolism | 32 | 0.0154 | 0.2045 |
MAP00330_Arginine_and_proline_metabolism | 63 | 0.0168 | 0.0062 |
c31_U133_probes | 346 | 0.0172 | 0.3197 |
MAP00380_Tryptophan_metabolism | 88 | 0.018 | 0.7238 |
MAP00380_Tryptophan_metabolism~ | 88 | 0.0195 | 0.7156 |
c7_U133_probes | 349 | 0.0207 | 0.1292 |
c15_U133_probes | 264 | 0.0232 | 0.4323 |
MAP00512_O_Glycans_biosynthesis | 15 | 0.0236 | 0.0322 |
MAP00970_Aminoacyl_tRNA_biosynthesis | 34 | 0.024 | 0.1054 |
c27_U133_probes | 266 | 0.0253 | 0.1722 |
MAP00251_Glutamate_metabolism | 35 | 0.0256 | 0.0259 |
c12_U133_probes | 251 | 0.0263 | 0.087 |
MAP00031_Inositol_metabolism | 7 | 0.0265 | 0.0677 |
MAP00410_beta_Alanine_metabolism | 27 | 0.0291 | 0.5854 |
c34_U133_probes | 452 | 0.0311 | 0.2366 |
c11_U133_probes | 192 | 0.0334 | 0.4341 |
c18_U133_probes | 248 | 0.0335 | 0.0167 |
MAP00590_Prostaglandin_and_leukotriene_metabolism | 34 | 0.0348 | 0.1956 |
c14_U133_probes | 302 | 0.0361 | 0.1327 |
c35_U133_probes | 470 | 0.0419 | 0.2794 |
OXPHOS_HG-U133A_probes | 114 | 0.0441 | 0.1705 |
ROS_HG-U133A_probes | 9 | 0.0446 | 0.1523 |
c3_U133_probes | 267 | 0.0455 | 0.5362 |
c30_U133_probes | 239 | 0.0462 | 0.1006 |
GO_0005739_HG-U133A_probes | 227 | 0.0467 | 0.3106 |
MAP00310_Lysine_degradation | 35 | 0.0477 | 0.4446 |
FA_HG-U133A_probes | 34 | 0.0485 | 0.1047 |