Prediction of antigenic epitopes on protein surfaces by consensus scoring

BMC Bioinformatics

Table 4 Prediction results for the testing set

*Complex*	*Unbound*	*No. of Surface Residues*	*No. of Interface Residues*	*Sensitivity* ^a	*Precision* ^a	*Specificity* ^a	*AUC*
2ARJ_HL:Q	1NEZ_G	99	18	0.278	0.227	0.790	0.604
2BDN_HL:A	1DOK_A	63	13	0.154	0.095	0.620	0.281
2FD6_HL:U	1YWH_A	225	14	0.500	0.089	0.659	0.617
2GHW_B:A	2GHV_E	148	27	0.519	0.311	0.744	0.727
2H9G_AB:R	1D4V_A	108	18	0.556	0.286	0.722	0.724
2J6E_IMHL:AB^b	2DTQ_AB	336	41	0.512	0.202	0.719	0.614
2NR6_CD:A	1YG9_A	233	19	0.947	0.234	0.724	0.870
2NYY_CD:A	2VUA_A	321	24	0.750	0.164	0.690	0.810
2P45_B:A	1KF2_A	104	13	0.154	0.057	0.637	0.553
2Q8B_HL:A	1Z40_A	228	25	0.440	0.147	0.685	0.645
2QQN_HL:A	1KEX_A	118	11	0.636	0.200	0.738	0.737
2R29_HL:A	1OK8_A	317	20	0.300	0.054	0.646	0.567
2R56_HL:A	1GX9_A	131	22	0.091	0.053	0.670	0.409
2UZI_HL:R	2EVW_X	132	21	0.286	0.171	0.739	0.505
3BN9_CD:B	1EAX_A	181	32	0.531	0.279	0.705	0.581
3BQU_CD:AB	2F5A_HL	336	12	1.000	0.098	0.660	0.914
3D85_AB:C	3D87_A	141	19	0.474	0.180	0.664	0.591
Mean		189	20.5	47.8%	16.7	69.5%	0.632

^a Sensitivity, precision, and specificity were recorded when 55% of surface residues were predicted as interface residues by the single term. ^bMultiple binding sites.

ISSN: 1471-2105