Table 1 Evaluation of embedded signal levels with two signal normalizations
From: Generation of Gene Ontology benchmark datasets with various types of positive signal
selected percentiles | |||||||||
|---|---|---|---|---|---|---|---|---|---|
M.T. meth. | Signal Classes | 0 | 5 | 25 | 50 | 75 | 95 | 100 | |
Holm | 5 | uncorr. | 2.54E-05 | 2.01E-05 | 1.59E-05 | 9.99E-06 | 5.8E-06 | 4.73E-06 | 4.26E-06 |
Holm | 10 | corrected | 0.0556 | 0.044 | 0.0348 | 0.0219 | 0.0127 | 0.0104 | 0.0093 |
Holm | 5 | uncorr. | 2.54E-05 | 2E-05 | 1.58E-05 | 9.99E-06 | 5.58E-06 | 4.73E-06 | 4.18E-06 |
Holm | 10 | corrected | 0.0555 | 0.0437 | 0.0346 | 0.0218 | 0.0122 | 0.0103 | 0.0091 |
FDR | 5 | uncorr. | 0.000124 | 0.000107 | 8.69E-05 | 5.38E-05 | 4.04E-05 | 2.75E-05 | 0.000021 |
FDR | 10 | corrected | 0.054 | 0.0481 | 0.044 | 0.0281 | 0.0191 | 0.0114 | 0.0093 |
FDR | 5 | uncorr. | 0.000246 | 0.000219 | 0.0002 | 0.000128 | 8.69E-05 | 0.000052 | 4.23E-05 |
FDR | 10 | corrected | 0.0547 | 0.0468 | 0.0382 | 0.0236 | 0.0177 | 0.0121 | 0.0092 |