Table 1 Binding site patterns used for evaluation
From: A stochastic context free grammar based framework for analysis of protein sequences
| Â | Brief description |
|---|---|
PS00219 | PROSITE pattern for the anion exchanger family (PDOC00192) |
PS00063 | PROSITE pattern for the aldo-keto reductase family (PDOC00061). Family binds Nicotinamide-Adenine-Dinucleotide Phosphate (NAP). |
PS00307 | Pattern created by extension of PROSITE pattern which is a legume lectin beta-chain signature (PDOC00278). Family binds calcium and manganese located in the C-terminal section of the beta-chain. |
MPI phosphatase | Pattern created by selecting the fragment which interacts with sulphate ions (SO4) from the PROSITE profile for Rhodanese domain (PS50206) which is present in M-phase inducer (MPI) phosphatase family. |
Zinc finger | Zinc finger meta-pattern created using 7 different PROSITE zinc finger patterns: PS00028, PS00518, PS00752, PS01030, PS01102, PS13000 and PS01358. |