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Table 3 Comparison of the performance of the RibEx package with pHMMs.

From: Riboswitch Detection Using Profile Hidden Markov Models

Family Number of sequences in the test set Number of sequences predicted by RibEx Number of sequences predicted by pHMM
FMN 183 183 183
Cobalamin 306 302 305
TPP 496 465 495
Glycine 217 184 217
Lysine 112 82 111
Purine 122 107 122
Sam 298 298 298
Glms 44 44 44