Table 3 Comparison of the performance of the RibEx package with pHMMs.
From: Riboswitch Detection Using Profile Hidden Markov Models
Family | Number of sequences in the test set | Number of sequences predicted by RibEx | Number of sequences predicted by pHMM |
|---|---|---|---|
FMN | 183 | 183 | 183 |
Cobalamin | 306 | 302 | 305 |
TPP | 496 | 465 | 495 |
Glycine | 217 | 184 | 217 |
Lysine | 112 | 82 | 111 |
Purine | 122 | 107 | 122 |
Sam | 298 | 298 | 298 |
Glms | 44 | 44 | 44 |