Table 1 Multicore with 2 threads and E-value equal to 10-3
From: PLAST: parallel local alignment search tool for database comparison
| Â | protein vs protein | protein vs DNA | DNA vs protein | ||||||
|---|---|---|---|---|---|---|---|---|---|
query bank | BLASTP | PLASTP | speedup | TBLASTN | TPLASTN | speedup | BLASTX | PLASTX | speedup |
1K | 4380 | 1446 | 3.02 | 805 | 319 | 2.52 | 2261 | 554 | 4.08 |
3K | 10860 | 2602 | 4.17 | 2344 | 556 | 4.21 | 6989 | 1591 | 4.39 |
10K | 52131 | 12415 | 4.19 | 7971 | 1416 | 5.26 | 21667 | 4981 | 4.34 |