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Figure 3 | BMC Bioinformatics

Figure 3

From: Evaluating the impact of scoring parameters on the structure of intra-specific genetic variation using RawGeno, an R package for automating AFLP scoring

Figure 3

Error rates and information content. In light grey, RawGeno datasets labelled with "RG" as prefix; in dark grey, GeneMapper datasets, labelled with "GM" as prefix. Only the quartiles are displayed on the box-plots. A. Mismatch error rate (Eb). B. and C. Bayesian error rates representing the probability (%) of mis-scoring allele presence (ε1.0) or absence (ε0.1). D.Information content per bin (Ibin), calculated as the mean inter-individual distance divided by the number of bins in the dataset. This statistic could also be computed for the manually scored dataset since it does not require replicated samples.

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BMC Bioinformatics

ISSN: 1471-2105

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