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Table 1 Condition-specific binding parameters for three yeast TFs.

From: BayesPI - a new model to study protein-DNA interactions: a case study of condition-specific protein binding parameters for Yeast transcription factors

Binding behavior TF name Environment E BP U BP Motif similarity score
Condition enabled MSN2 YPD -21.96 -13.97 0.76
  MSN2 H 2 O 2 hi -18.43 -17.57 0.92
  MSN2 H 2 O 2 lo -21.54 -16.64 0.91
Condition expanded GCN4 YPD -23.84 -22.73 0.94
  GCN4 Sm -24.26 -21.68 0.93
  GCN4 Rapa -24.54 -21.27 0.94
Condition altered STE12 YPD -17.80 -16.40 0.91
  STE12 But14 -26.45 -22.14 0.92
  STE12 Alpha -20.71 -19.25 0.89
  1. Minimal binding energy (consensus) E BP and chemical potential U BP are estimated by the BayesPI using ChIP-chip experimental data under various conditions [27], such as rich medium condition (YPD), a high hyperoxic (H2O2hi), a moderate hyperoxic (H2O2lo), amino acid starvation (Sm), nutrient deprived (Rapa), filamentation inducing (But14) and mate inducing (Alpha).