From: Arabidopsis gene co-expression network and its functional modules
module | # annotated genes1 | GO term2 | genes in GO term3 | p value4 |
---|---|---|---|---|
1 | 1208 | photosynthesis | 97/107 | 1.38E-52 |
2 | 684 | response to oxidative stress | 30/88 | 1.43E-07 |
3 | 438 | protein biosynthesis | 95/204 | 5.68E-52 |
4 | 256 | DNA metabolism | 59/107 | 9.07E-52 |
5 | 104 | defense response | 18/205 | 4.79E-08 |
6 | 87 | reproductive structure development | 15/100 | 3.16E-11 |
7 | 78 | protein ubiquitination | 5/14 | 1.00E-06 |
8 | 59 | defense response | 19/205 | 1.65E-13 |
9 | 48 | establishment and/or maintenance of chromatin architecture | 6/43 | 1.71E-06 |
11 | 39 | cell wall modification | 5/32 2 | 64E-06 |
15 | 36 | response to wounding | 7/54 | 4.50E-08 |
18 | 33 | cuticle biosynthesis | 5/8 | 3.45E-10 |
21 | 29 | toxin metabolism | 5/25 | 1.54E-07 |
27 | 23 | glucosinolate biosynthesis | 4/9 | 3.12E-08 |
28 | 18 | RNA processing | 5/65 | 1.65E-06 |
31 | 20 | monosaccharide metabolism | 5/47 | 5.67E-07 |
33 | 17 | response to heat | 10/47 | 1.69E-17 |
34 | 18 | secondary cell wall biosynthesis (sensu Magnoliophyta) | 6/8 | 1.51E-14 |
35 | 17 | protein biosynthesis | 11/204 | 1.75E-12 |
41 | 16 | enzyme linked receptor protein signaling pathway | 5/51 | 2.49E-07 |
42 | 15 | organic acid metabolism | 9/186 | 2.38E-10 |
43 | 13 | response to auxin stimulus | 7/69 | 6.62E-11 |
46 | 14 | lipid metabolism | 7/194 | 1.93E-07 |
50 | 12 | cellular respiration | 6/15 | 1.34E-13 |
56 | 11 | leaf development | 4/28 | 1.87E-07 |
67 | 10 | starch metabolism | 8/20 | 3.18E-19 |
79 | 9 | indoleacetic acid metabolism | 3/4 | 1.28E-08 |
80 | 8 | phenylpropanoid metabolism | 6/44 | 5.71E-12 |
119 | 6 | response to heat | 6/47 | 3.14E-13 |
122 | 6 | lipid transport | 4/47 | 7.49E-08 |
140 | 5 | nitrogen compound metabolism | 5/129 | 7.23E-09 |
154 | 4 | wax biosynthesis | 2/7 | 8.65E-06 |
165 | 4 | glutamate biosynthesis | 2/2 4 | 12E-07 |
170 | 4 | electron transport | 4/219 | 2.64E-06 |
173 | 4 | fatty acid beta-oxidation | 2/9 | 1.48E-05 |
180 | 4 | purine transport | 2/3 | 1.24E-06 |
190 | 4 | response to water deprivation | 4/41 | 2.87E-09 |
201 | 2 | Glycolysis | 2/16 | 8.24E-06 |
205 | 3 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | 2/5 | 2.06E-06 |
213 | 4 | response to heat | 4/47 | 5.05E-09 |
224 | 3 | fatty acid beta-oxidation | 2/9 | 7.41E-06 |
238 | 3 | sulfolipid biosynthesis | 2/2 | 2.06E-07 |
266 | 3 | ovule development | 2/12 | 1.36E-05 |
273 | 3 | phenylpropanoid metabolism | 3/44 | 5.06E-07 |
311 | 3 | Proteolysis | 3/130 | 1.37E-05 |
315 | 3 | response to iron ion | 2/3 | 6.18E-07 |