A structure filter for the Eukaryotic Linear Motif Resource

BMC Bioinformatics

Table 3 Number and percentage of true and random motifs assigned to each bin by the different score types

Score type	bin	TM	%TM	random	%random	ratio
Q _acc	sparse	24	15.19	8835	40.05	0.3793
	neutral	86	54.43	11106	50.34	1.0812
	enriched	48	30.38	2119	9.61	3.1613
Q _sse	sparse	33	20.89	8910	40.39	0.5172
	neutral	30	18.99	6004	27.22	0.6976
	enriched	95	60.13	7146	32.39	1.8564
Q _and	sparse	26	16.46	8821	39.99	0.4116
	neutral	84	53.16	11263	51.06	1.0411
	enriched	48	30.38	1976	8.96	3.3906

Score type: can be based on accessibility (Q_acc) only, on secondary structure only (Q_sse) or on a combination of them (Q_and= Q_acc+ Q_sse); TM (random): number of sparse/neutral/enriched true motif (random) matches; %TM (%random): percentage of sparse/neutral/enriched true motif (random) matches; ratio: %TM/%random. The scoring scheme implemented both in the Web Server and in the Web Service is marked in bold.

ISSN: 1471-2105