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Table 4 Comparison the (PS)2-v2 server with (PS)2-original and (PS)2-CASP8 servers on the 154 TBM targets in CASP8 based on GDT_TS scores

From: (PS)2-v2: template-based protein structure prediction server

Servers

SIa ≥ 30% (nb = 40)

20% ≤ SI < 30% (n= 47)

SI < 20% (n= 67)

 

Average

p -value

Average

p -value

Average

p -value

(PS)2-original

82.6

0.0984

67.7

0.0029

44.9

4.0E-7

(PS)2-CASP8

84.3

0.323

70.6

0.0766

51.0

6.6E-4

(PS)2-v2

84.3

-

71.1

-

54.0

-

  1. a Sequence identity (SI) between the target and the best template.
  2. bn is the number of targets.
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BMC Bioinformatics

ISSN: 1471-2105

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