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Table 4 Comparison the (PS)2-v2 server with (PS)2-original and (PS)2-CASP8 servers on the 154 TBM targets in CASP8 based on GDT_TS scores

From: (PS)2-v2: template-based protein structure prediction server

Servers SIa ≥ 30% (nb = 40) 20% ≤ SI < 30% (n= 47) SI < 20% (n= 67)
  Average p -value Average p -value Average p -value
(PS)2-original 82.6 0.0984 67.7 0.0029 44.9 4.0E-7
(PS)2-CASP8 84.3 0.323 70.6 0.0766 51.0 6.6E-4
(PS)2-v2 84.3 - 71.1 - 54.0 -
  1. a Sequence identity (SI) between the target and the best template.
  2. bn is the number of targets.