Skip to main content

Table 2 Loop design test data set.

From: An experimental loop design for the detection of constitutional chromosomal aberrations by array CGH

Experiment Patient Deletions/duplications length Confirmed with
1 1 deletion on 13 25 karyotyping
  2 duplication of X (sex mismatch) 149 karyotyping
2 1 duplication of 18 102 karyotyping and FISH
3 1 deletion on 10 6  
  2 duplication on 7 20  
  3 duplication on 15 43  
4 2 deletion on 4 15 FISH
  3 Inversion (p11-q13)   karyotyping
5 1 deletion on 12 14 FISH
6 1 deletion on 9 6  
  3 deletion on 12 7  
7 2 duplication on 5 13  
  2 deletion on 18 16  
8 1 duplication on 13 15 FISH
  1 deletion on 13 12 FISH
  2 balanced translocation (2;6)(q33,1;p23)   karyotyping
9 1 duplication on 7 11  
  1 deletion on 7 15  
  2 deletion of X (sex mismatch) 158 karyotyping
  3 duplication on 21 8  
  1. The nine loop design experiments, listed in the table, will be used as a test data set to compare the two methods, linear model and mixed model. For each aberration present in the experiment the number of deleted or duplicated reporters is indicated.