Figure 6
From: Iterative pruning PCA improves resolution of highly structured populations
Bovine consensus subpopulation tree on ten replicate ipPCA runs. Each cell contains breed (population) labels CHL, SGT, JER, HOL, BRM, NRC, HFD, LMS, or ANG. The number of individuals is presented in parentheses next to each label. The number of PCs used for clustering is indicated in parentheses in each cell. The blue cell indicates the entire dataset. Nested datasets containing unresolved structure are in green, while the terminated red cells represent resolved subpopulations.