From: Iterative pruning PCA improves resolution of highly structured populations
Dataset | AWclust | STRUCTURE | BAPS | ipPCA |
---|---|---|---|---|
model 1 simulated (3 subpopulations) | 3 | 3 | 2 | 3 |
model 2 simulated (5 subpopulations) | 5 | 6 | 5 | 5 |
model 3 simulated (20 subpopulations, 30 datasets) | N/A^{1} | N/D^{2} | 11^{3} | 20^{3} |
HapMap (4 population labels with 50000 SNPs) | 3 | 3 | 3 | 4 |
bovine (9 population labels with 9329 SNPs) | N/A^{1} | 10 | 14 | 9 |
Shriver's (14 population labels with 11555 SNPs) | N/A^{1} | 14^{4} | 5 | 12 |