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Table 1 General properties of homologous gene groups.

From: Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods

 

OrthoMCL

InterPro

Conserved groups

8999

2716

Group size(1)

27.01 ± 38.06

143.74 ± 392.84

Size per species(1)

0.51 ± 0.72

2.71 ± 7.41

FNUW/(FNUW+TNUW)

0.0061

0.084

FNW/(FNW+TNW)

0.026

0.49

Clustering Coefficient(2)

0.295

0.516

Characteristic path length(2)

2.790

2.003

  1. (1)Cells show mean and standard deviation.
  2. (2)Calculated on the functional link network between groups present in STRING database.
  3. FN = False Negative, TN = True Negative
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BMC Bioinformatics

ISSN: 1471-2105

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