From: JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes
Application
Mapping reads* to chromosome 12 contig
Mapping reads* to chromosome 21 contig
RMAP
27 (2.7%)
10 (1.0%)
JANE
37 (3.7%)
18 (1.8%)
SeqMap
26 (2.6%)
7 (0.7%)
SOAP
11 (2.0%)
Bowtie