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Table 1 BP score improvement over the input datasets.

From: Phylogeny-guided interaction mapping in seven eukaryotes

Species

CAPPI-Integ

CAPPI-Integ-3sp

 

Data Size

Input Score

Output Score

Wilcoxon p -value

Data Size

Input Score

Output Score

Wilcoxon p -value

Yeast

28590

0.377

0.412

1.21e-31

1890

0.320

0.381

8.03e-06

Fly

12107

0.295

0.425

1.26e-113

4049

0.255

0.303

4.78e-05

Worm

2604

0.364

0.469

1.50e-21

856

0.374

0.485

2.02e-09

Arabidopsis

1349

0.596

0.623

0.02

NA

Rat

1271

0.296

0.384

9.07e-06

NA

Mouse

2456

0.417

0.463

1.53e-06

NA

Human

17672

0.353

0.395

1.38e-31

NA

  1. The mean BP score of the input dataset and the inferred dataset of the same size are given for CAPPI-Integ and CAPPI-Integ-3sp. In all cases the inferred interaction set receives a significantly higher score than its input counterpart.
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BMC Bioinformatics

ISSN: 1471-2105

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