Table 3 Top 50 control genes as resulting from aggregating the ten breast cancer data sets. Two genes – RPS11 and UBB – were selected as control genes and validated by RT-PCR
From: Selecting control genes for RT-QPCR using public microarray data
Rank | Gene symbol | Gene ID | Description |
|---|---|---|---|
1 | RPL37A | 6168 | ribosomal protein L37a |
2 | RPL27A | 6157 | ribosomal protein L27a |
3 | RPS18 | 6222 | ribosomal protein S18 |
4 | RPL30 | 6156 | ribosomal protein L30 |
5 | RPL41 | 6171 | ribosomal protein L41 |
6 | CALM2 | 805 | calmodulin 2 (phosphorylase kinase, delta) |
7 | RPL27 | 6155 | ribosomal protein L27 |
8 | K-ALPHA-1 | 10376 | alpha tubulin |
9 | RPS11 | 6205 | ribosomal protein S11 |
10 | RPL39 | 6170 | ribosomal protein L39 |
11 | RPS13 | 6207 | ribosomal protein S13 |
12 | NACA | 4666 | nascent-polypeptide-associated complex alpha polypeptide |
12 | RPL23A | 6147 | ribosomal protein L23a |
14 | RPS24 | 6229 | ribosomal protein S24 |
15 | HNRPA1 | 3178 | heterogeneous nuclear ribonucleoprotein A1 |
16 | RPL9 | 6133 | ribosomal protein L9 |
17 | RPLP1 | 6176 | ribosomal protein, large, P1 |
18 | RPL32 | 6161 | ribosomal protein L32 |
19 | LAPTM4A | 9741 | lysosomal-associated protein transmembrane 4 alpha |
20 | RPS15A | 6210 | ribosomal protein S15a |
21 | DYNLL1 | 8655 | dynein, light chain, LC8-type 1 |
22 | ACTG1 | 71 | actin, gamma 1 |
23 | TUBA6 | 84790 | tubulin, alpha 6 |
24 | SRP14 | 6727 | signal recognition particle 14kDa (homologous Alu RNA binding protein) |
25 | MYL6 | 4637 | myosin, light chain 6, alkali, smooth muscle and non-muscle |
26 | RPL24 | 6152 | ribosomal protein L24 |
27 | FAU | 2197 | Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 |
28 | RPL31 | 6160 | ribosomal protein L31 |
29 | RPS15 | 6209 | ribosomal protein S15 |
30 | MTCH1 | 23787 | mitochondrial carrier homolog 1 (C. elegans) |
31 | UBB | 7314 | ubiquitin B |
32 | RPL37 | 6167 | ribosomal protein L37 |
33 | HMGN2 | 3151 | high-mobility group nucleosomal binding domain 2 |
34 | RPS27 | 6232 | ribosomal protein S27 (metallopanstimulin 1) |
35 | GDF8 | 2660 | growth differentiation factor 8 |
36 | RPL38 | 6169 | ribosomal protein L38 |
37 | RPS29 | 6235 | ribosomal protein S29 |
38 | SULT1C2 | 27233 | sulfotransferase family, cytosolic, 1C, member 2 |
39 | RPL6 | 6128 | ribosomal protein L6 |
40 | UBC | 7316 | ubiquitin C |
41 | UBA52 | 7311 | ubiquitin A-52 residue ribosomal protein fusion product 1 |
42 | MRFAP1 | 93621 | Mof4 family associated protein 1 |
43 | HNRPK | 3190 | heterogeneous nuclear ribonucleoprotein K |
44 | PARK7 | 11315 | Parkinson disease (autosomal recessive, early onset) 7 |
45 | PSMC1 | 5700 | proteasome (prosome, macropain) 26S subunit, ATPase, 1 |
46 | LOC158572 | 158572 | hypothetical protein LOC158572 |
47 | RPS8 | 6202 | ribosomal protein S8 |
48 | ATP5A1 | 498 | ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle |
49 | EIF4H | 7458 | eukaryotic translation initiation factor 4H |
50 | CD63 | 967 | CD63 molecule |