Table 1 Compilation of training and test datasets.
Dataset | Selection Criteria from Swiss-Prot | Number of Proteins (and SPs) | Precision | Recall |
|---|---|---|---|---|
Training set #1 | Single EC annotation and Date-Integrated before 7/1/2006 | 89,854 (#SPs = 87,017) | 100% | 85% |
"Enzyme Test Set" | EC annotation and Date-Integrated between 7/1/2006 and 7/1/2008 | 24,443 | 98% | 70% |
"Ten Organism Test-Set" | EC annotation and Date-Integrated between 7/1/2006 and 7/1/2008 and all non-enzymes before 7/1/2008 | 4,509 | 98% | 76% |
Training set #2 | Single EC annotation and Date-Integrated before 7/27/2009 | 201,169 (#SPs = 312,465) | 100% | 94% |