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Table 5 Results of DREAM 2 Challenge #3 Data Compared to Other Approaches

From: Reconstructing nonlinear dynamic models of gene regulation using stochastic sampling

Challenge Best submitted Our method No self-regulations
DIRECTED-SIGNED-EXCITATORY AUC = 0.79 AUC = 0.61 AUC = 0.79
  AUCPR = 0.72 AUCPR = 0.25 AUCPR = 0.54
DIRECTED-SIGNED-INHIBITORY AUC = 0.63 AUC = 0.96 AUC = 0.96
  AUCPR = 0.14 AUCPR = 0.45 AUCPR = 0.45
DIRECTED-UNSIGNED AUC = 0.73 AUC = 0.56 AUC = 0.79
  AUCPR = 0.55 AUCPR = 0.30 AUCPR = 0.57
  1. Results of the DREAM 2 challenge #3 data of our method (second column) compared to submitted best results from [53] (first column). The third column gives the AUC values for our method when self-regulations are omitted. Our method clearly outperforms all submitted methods in the DIRECTED-SIGNED-INHIBITORY challenge; furthermore, when neglecting self-regulations, we also beat the best submitted method in the DIRECTED-UNSIGNED challenge.