Trellis boxplots of pAUC scores. Trellis boxplots of pAUC using a p < 0.05 threshold. (A) Simulated "spike-in" variance models with 3, 4 and 5 replicates. (B) Latin Square data: processed with 6 expression summary methods. Differential expression tests: FC: Fold Change, limma: limma moderated t-statistic, BRB: BRB t-statistic, CyberT: CyberT t-statistic, LPE: LPE z-statistic, t-stat: t-statistic.