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Table 3 Test statistic ranks of the 10 true positive genes obtained after glog, lowess, combination of glog and lowess, combination of lowess and enhanced quantile, union and intersection gene lists.

From: A comparison on effects of normalisations in the detection of differentially expressed genes

ID Symbol lower FC upper raw glog lowess glog+lowess lowess+enhancedQ
BL-003F10 PBX2 -2.02 -3.42 -4.83 130 474 158 26 179
BL-003F10 PBX2 -1.95 -3.36 -4.77 139 486 172 32 178
2-014C09 BTG1 -0.09 -1.94 -3.8 1080 7088 3302 741 556
BL-010C07 DLEU2 -0.99 -1.91 -2.83 275 902 529 163 613
BL-010C07 DLEU2 -0.81 -1.79 -2.77 375 955 538 184 624
2-025D04 CEBPA 2.51 1.53 0.54 527 1976 461 1462 2191
2-029B10 FUS -0.2 -1.51 -2.81 746 7268 543 855 1101
2-025D04 CEBPA 2.52 1.31 0.11 660 5228 1243 1678 677
2-029B10 FUS -0.41 -1.23 -2.05 685 1236 820 385 1421
2-019A01 CAV1 -0.05 -1.2 -2.34 1960 6519 1962 8034 1595
  1. FC: fold change; upper and lower: confidence interval upper and lower bounds; Symbol: gene symbol.