Quantitative measures for the management and comparison of annotated genomes

BMC Bioinformatics

Table 5 Orthologous gene annotations with greatest difference in splice complexity.

Organism	Gene	SO Class	Transcript Count	Splice Complexity
D. melanogaster	Dscam	0:0:59	60	148.80 (0.08)
A. gambiae	ENSANGG00000015725	0:0:1	2	0.48 (0.48)
M. musculus	Sorbs2	0:1:31	33	168.63 (0.32)
H. sapiens	Sorbs2	0:0:1	2	0.23 (0.23)

Columns: organism, gene name, SO classification code (see Figure 4 for key), number of transcripts, Splice Complexity (Splice Complexity per transcript-pair in parenthesis). The D. melanogaster – A. gambiae pair is shown in the top half of the table, the M. musculus – H. sapiens below. Orthologous genes were identified using reciprocal best hit BLASTP searches.

ISSN: 1471-2105