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Figure 1 | BMC Bioinformatics

Figure 1

From: RNAslider: a faster engine for consecutive windows folding and its application to the analysis of genomic folding asymmetry

Figure 1

Measuring the run time of the algorithm. The first 1,000,000 bps of Oryzias latipes chromosome 9 were scanned with windows of size 100, 200, ..., 2000. As expected, the RNALfold graph fits a quadratic trend line with R = 0.9964, and the RNAslider graph fits a linear trend line with R = 0.999. The runtime measurement was made with an Intel Xeon 3.0 GHz CPU on a Linux machine.

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BMC Bioinformatics

ISSN: 1471-2105

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