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Table 3 Executing time analysis of EMBF

From: Short read DNA fragment anchoring algorithm

Data Set

Filtering

Matching

Addressing

Others

33.7 Mbps

38.93%

42.13%

3.57%

15.37%

69.3 Mbps

41.00%

38.71%

3.06%

17.23%

134 Mbps

63.78%

22.41%

1.6%

12.12%

  1. The filtering and matching column corresponds to time consumed in percentage for step 3 and step 4 in EMBF algorithm repetitively. We also separated the overhead to generate the index access address, and listed it in addressing column. The others column include sequence reading, results writing and some log utility overheads. The value in this table is the mean value of 10 K anchor executing results.
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BMC Bioinformatics

ISSN: 1471-2105

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