Figure 3
From: SE: an algorithm for deriving sequence alignment from a pair of superimposed structures
Alignments of a sample pair. The two structures in CD03493 http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03493, 2FBW_Q (red) and 1L0V_C (blue) were superimposed according to the CDD alignment in both panels A and B. The RMSD is 3.88 Å and the sequence identity is 8%. Pseudobonds in green indicate the aligned pairs from SE (Panel A) and DP (panel B). The sequence alignment is shown below in both panels; residues in bold upper case letters are aligned, others are not. The region in the magenta dashed squares corresponds to the magenta dashed oval in the superimposed structures above.