Table 1 Amino acid indices related to (dis)order. The five sets of amino acid indices that are most correlated to the (dis)order of proteins are the features used in prediction.
From: Predicting disordered regions in proteins using the profiles of amino acid indices
AA-index set | Description |
|---|---|
VINM940102 | Normalized flexibility parameters (B-values) for each residue surrounded by none rigid neighbours |
BULH740101 | Surface tension of amino acid solutions: A hydrophobicity scale of the amino acid residues |
PUNT030102 | Knowledge-based membrane-propensity scale from 3D_Helix in MP- topo databases |
CHOP780203 | Normalized frequency of beta-turn |
CHOP780211 | Normalized frequency of C-terminal non beta region |