Table 10 Verification Query comparing experimental results for the top 10 upregulated genes. Query 3. SeRQL query selects wildtype peptide abundance for locus_tag FTT_0552, upregulated in the transcriptomic experiment.
SELECT ftt, ftn, exp, x FROM |
|---|
{ftt} ncbi:blastn {ftn}, |
{psn} rdfs:seeAlso {ftn}, |
{analysis} mgla:poson {psn}, |
{analysisID} rdf:subject {analysis}, |
{analysisID} rdf:object {exp}, |
{analysisID} mgla:PeptideAbundance {x} |
WHERE ftt = <http://www.genome.jp/dbget-bin/www_bget?ftu+FTT0552> |
AND xsd:integer(x) > 0 |
AND exp LIKE "*wildtype*" |
USING namespace mgla = <http://www.francisella.org/novicida/schema/fnu112/experiments/mgla>, |
soft = <http://www.ncbi.nlm.nih.gov/projects/geo/info/soft2.html#>, |
nwrce = <https://tools.nwrce.org/geo/schema/>, |
ncbi = <http://ncbi.nlm.nih.gov/> |