Skip to main content

Table 5 Annotation performance

From: Comparing gene annotation enrichment tools for functional modeling of agricultural microarray data

Tool # Genes input #Genes recognized #Genes annotated #Annotations retrieved
A. Test gene annotation set
Onto-Express 60 60 56 313
EasyGO 60 56 45 339
GOstat 60 60 56 303
DAVID 60 60 58 1662
AgBase 60 60 49 474
B. Experimental chicken gene set
Onto-Express 31 29 24 328
EasyGO 31 31 21 104
GOstat 31 31 25 227
DAVID 31 26 26 615
AgBase 31 27 22 136
  1. For each tool, the number of gene identifiers used as input, the number of genes recognized, the number of genes for which some GO annotation was retrieved, and the total number of annotations for all genes is given for both the Test Set and the Experimental Set.